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rvandewater
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YAIB
🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
https://github.com/rvandewater/YAIB/wiki
MIT License
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Version release based on practice Cassandra use
#155
rvandewater
opened
1 day ago
1
Automatically infer variables in a dataset
#154
rvandewater
opened
4 weeks ago
0
Major update from practice use in cassandra project
#153
rvandewater
closed
1 day ago
1
Polars
#152
rvandewater
closed
3 months ago
2
Bump tqdm from 4.64.1 to 4.66.3
#151
dependabot[bot]
closed
3 months ago
0
Bump black from 24.2.0 to 24.3.0
#150
dependabot[bot]
closed
3 months ago
0
Bump scikit-learn from 1.2.2 to 1.5.0
#149
dependabot[bot]
closed
3 months ago
1
Bump pyarrow from 11.0.0 to 14.0.1
#148
dependabot[bot]
closed
3 months ago
0
Hyperparameter opt
#147
rvandewater
closed
3 months ago
0
Memory optimisation for Temporal Fusion Transformer
#146
youssefmecky96
opened
4 months ago
0
Rename kf to kidney_function
#145
prockenschaub
closed
8 months ago
0
inconsistency between different preprocessing pipelines
#144
leoleoasd
closed
6 months ago
2
Add cross-correlation as imputation evaluation metric
#143
rvandewater
opened
11 months ago
0
merging
#142
youssefmecky96
closed
1 year ago
1
'x is not a list '-- YAIB-cohorts
#141
njtp111
closed
6 months ago
3
Pooled experiments
#140
rvandewater
closed
1 year ago
0
By default, use quicker versions of `nafill` recently added to ReciPys
#139
prockenschaub
closed
1 year ago
0
Debug flag broken
#138
HendrikSchmidt
closed
1 year ago
1
comment in on_test_epoch_start
#137
rvandewater
closed
1 year ago
0
Transfer learning
#136
rvandewater
closed
1 year ago
0
Added metrics
#135
rvandewater
closed
1 year ago
0
logging fix
#134
rvandewater
closed
1 year ago
0
Fix commands flags
#133
HendrikSchmidt
closed
1 year ago
2
Fix regular ML model training
#132
rvandewater
closed
1 year ago
1
Default command in readme has wrong syntax
#131
HendrikSchmidt
closed
1 year ago
2
`evaluate` currently doesn't work
#130
HendrikSchmidt
closed
1 year ago
0
Updated documentation and fixed minor bugs
#129
rvandewater
closed
1 year ago
0
Check if order is preserved
#128
rvandewater
closed
1 year ago
3
Use correct (?) scaling in `DefaultRegressionPreprocessor`
#127
mlondschien
closed
1 year ago
2
Dataset fix and small setup/readme adjustments
#126
rvandewater
closed
1 year ago
0
`icu-benchmarks train` raises `pkg_resources.DistributionNotFound` on osx-arm64
#125
mlondschien
closed
1 year ago
2
Recipies update
#124
rvandewater
closed
1 year ago
1
Xai
#123
rvandewater
opened
1 year ago
0
Pypi readme fixes
#122
rvandewater
closed
1 year ago
0
reformat
#121
rvandewater
closed
1 year ago
0
Requirements and setup update
#120
rvandewater
closed
1 year ago
0
Update master
#119
rvandewater
closed
1 year ago
0
Major revision for release
#118
rvandewater
closed
1 year ago
0
Adding all models from HyperImpute, fixes to SSSD models and final code cleanup
#117
Snagnar
closed
1 year ago
0
Refactoring update
#116
rvandewater
closed
1 year ago
1
Documentation changes
#115
rvandewater
closed
1 year ago
0
Update Master
#114
rvandewater
closed
1 year ago
0
Create data interface
#113
rvandewater
closed
1 year ago
1
Aggregate experiments script
#112
rvandewater
closed
1 year ago
0
Added automatic checkpoint search
#111
rvandewater
closed
1 year ago
0
Ensure hyperparameter tuning reproducibility
#110
HendrikSchmidt
closed
1 year ago
1
Potential memory leak in preprocessing
#109
rvandewater
closed
1 year ago
1
[WIP] Domain adaptation
#108
HendrikSchmidt
opened
1 year ago
0
Preprocessing eICU leads to an error
#107
HendrikSchmidt
closed
1 year ago
1
Reduce Metric Files
#106
rvandewater
closed
1 year ago
2
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