Closed armintoepfer closed 6 years ago
Hello @armintoepfer, I am not sure if I understand your request. You want to call consensus if each base has at least 5 coverage? Or you want only those bases that have at least 5 coverage?
Thanks for kind words!
@armintoepfer, I am pinging you if you by any chance have not seen my reply.
Oh sorry. I figured it out on my own.
First up, great work!
Is there any chance you can add a minimum coverage requirement before calling a base? The idea behind that, if I have 10 reads with a large deletion and 2 with a partial deletion, I only want to call bases in the consensus with at least coverage of, e.g., 5.
Thank you!