Closed AndreaGuarracino closed 3 years ago
Hi Andrea, at this point no. I'll figure out a way how to enable it, but in 2 weeks or so.
Best regards, Robert
I forgot about this issue, sorry. Would it be acceptable to print the GFA first, followed by an empty line, and then the FASTA (both to stdout)? Or without the new line, the FASTA can be distinguished by >
at the beginning of line.
Hi Robert,
I think it would work because we users should just add a shell/convenient way to separate the two parts on the fly into two different files. Thank you!
I enabled multiple -r
options so you can mix and match different output formats as you like. E.g. you can now run spoa as spoa -r 0 -r 1 -r 0 reads.fa
and you will get consensus, msa, consensus as output.
Nice, it is very general! I would suggest editing the documentation, because now, for example, -r1 -r0
is very similar to -r2
, but in the first case the consensus is without gaps (and its header is slightly different). However, it works well, thank you! Now I want #31. Push, push, push! :P
Hi @rvaser,
is it possible to obtain as output in a single run both the partial order graph (GFA) and the multiple sequence alignment (FASTA)?