Can this be used on nanopure data?

rvaser / spoa

SIMD partial order alignment tool/library

MIT License

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Can this be used on nanopure data? #60

Open raw937 opened 2 years ago

raw937 commented 2 years ago

Curious as I am looking for a long read mapper that does global over local.

many thanks, Rick

rvaser commented 2 years ago

Hello Richard, Spoa is a vectorized (SIMD) multiple sequence alignment (MSA) tool with quadratic complexity, hence will need a lot of memory for long sequences. What exactly is your use case?

Best regards, Robert