rvicedomini / strainberry

Automated strain separation of low-complexity metagenomes
MIT License
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Short reads #13

Open steven-bioinfo opened 10 months ago

steven-bioinfo commented 10 months ago

Hello,

Has your software ever been tested and evaluated on illumina short reads? I want to assemble an ecosystem with several strains of the same species, but the standard assembly tools don't allow me to discriminate between the strains correctly. According to the literature, recent tools like yours are all based on long reads and not for short reads.

Thank you for your help,

Steven