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rwdavies / QUILT

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can't find the file:hla_ancillary_files/refseq.hg38.chr6.26000000.34000000.txt.gz #16

Closed beifanglingyang closed 2 years ago

beifanglingyang commented 2 years ago

Hi Robert, I tried to run the QUILT HLA reference panel construction example:https://github.com/rwdavies/QUILT/blob/master/example/QUILT_hla_reference_panel_construction.Md But I could not find the file of gene information:--refseq_table_file=hla_ancillary_files/refseq.hg38.chr6.26000000.34000000.txt.gz .There are only three files in the directory "hla_ancillary_files":GRCh38_full_analysis_set_plus_decoy_hla.dict, hlagenes.txt, and quilt_hla_supplementary_info.txt.

I would like to know if I missed any information that prevents this file from being found.

Thanks so much!

rwdavies commented 2 years ago

Apologies, I had it in my local copy but forgot to push it. Should be there now. Thanks, Robbie

beifanglingyang commented 2 years ago

Thanks for your quick reply! Now, I can see the file ,so I'II close the issue. Wei