Open rodrigopsav opened 2 years ago
Ah, so QUILT can work without a reference panel (see below the help message for the genetic map file option). In that case, it should default to 1 cM/Mbp (the default of expRate
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Path to file with genetic map information, a file with 3 white-space delimited entries giving position (1-based), genetic rate map in cM/Mbp, and genetic map in cM. If no file included, rate is based on physical distance and expected rate (expRate) [default \"\"]
Thanks for your help.
Hello, I've been working with LPS imputation and I am trying to use a generic genetic map. I've got the following message. Is there any suggestion how to write a generic genetic map of 1cMperMb? Thanks
$(dirname $CONDA_PREFIX)/imputeme/bin/QUILT_prepare_reference.R \