I could not see this in the paper, or in the GitHub readme, maybe I missed it, but I could not see anything about how the input .bam files are processed. When we supply a list of .bam files, are they processed one by one, or does QUILT work with a bulk of genomes in parallel?
Hey, the .bam files are processed independently, one by one, e.g. if you ran them all in separate runs, or at the same time, the results would be the same.
Hello,
I could not see this in the paper, or in the GitHub readme, maybe I missed it, but I could not see anything about how the input .bam files are processed. When we supply a list of .bam files, are they processed one by one, or does QUILT work with a bulk of genomes in parallel?
Thank you in advance,