search

rwdavies / QUILT

QUILT: Low coverage whole genome sequence imputation with large reference panels
https://www.nature.com/articles/s41588-021-00877-0
GNU General Public License v3.0
53 stars 10 forks source link

output_read_label_prob misssing from the release 2.0.0 tarball #43

Open sounkou-bioinfo opened 2 hours ago

sounkou-bioinfo commented 2 hours ago

Hi,

When trying the example data, i get the error 

  unused argument (output_read_label_prob = opt$output_read_label_prob)

I check the release tarball, and the option is missing from the the R files. 
wget https://github.com/rwdavies/QUILT/releases/download/2.0.0/QUILT_2.0.0.tar.gz 
tar xf 
grep output_read_label_prob  QUILT/R/*R

Building and installing the package from the QUILT folder resolves the issue (QUILT 2.0.1). The readme can be modify accordingly

rwdavies commented 2 hours ago

@Zilong-Li are you OK to do the update?

Zilong-Li commented 1 hour ago

Hi @rwdavies, I am on vacation until 1st November. Will do it later. @sounkou-bioinfo The master branch has unreleased commit. You can just use the released version unless you want to work with undocumented feature.