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rwdavies / STITCH

STITCH - Sequencing To Imputation Through Constructing Haplotypes
http://www.nature.com/ng/journal/v48/n8/abs/ng.3594.html
GNU General Public License v3.0
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1.6.3 vs 1.6.5 output differences? #40

Closed jelber2 closed 4 years ago

jelber2 commented 4 years ago

Hi,

I ran STITCH 1.6.3 as it was on bioconda and not yet 1.6.5. Do you except there to be any differences in output between the two versions if not using the bx tag?

Best, Jean Elbers

rwdavies commented 4 years ago

Thanks, I don't know why 1.6.5 hasn't appeared yet, I've asked bioconda core for some help to see if I forgot something. There should not be any differences unless your BAMs have entries in the BX tags, which you would have if you were using 10X or some unique molecular identifier method in your library prep

jelber2 commented 4 years ago

Ok thanks!! No BX in my BAM files.