Installed Giggle following instructions in the README; running Ubuntu 16.04.4 Xenial embedded in Windows 10. Ran test cases and fail 15/27. Looks like most of the passes shouldn't be passes at all, as giggle is throwing an error reading a file.
check_intersections_per_file ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL EXIT CODE (LINE 41)
--> expected EX_OK, observed EX_IOERR
FAIL "0" != "1412" (LINE 42)
check_chr_v_nochr_search_1 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_2 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_3 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_4 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_5 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_6 ran in 1 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_7 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_8 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_9 ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_10 ran in 1 sec with 1/0 lines to STDERR/OUT
FAIL "11" != "0" (LINE 55)
giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file
PASS "0" == "0" (LINE 56)
check_bulk_insert ran in 0 sec with 0/23 lines to STDERR/OUT
PASS "23" == "23" (LINE 79)
giggle: Error reading file "../data/many_i/cache.0.idx": End of file
FAIL "0" != "24" (LINE 80)
check_offset_additional_data ran in 1 sec with 1/0 lines to STDERR/OUT
FAIL "72" != "0" (LINE 87)
PASS "0" == "0" (LINE 88)
check_dense_index ran in 0 sec with 1/0 lines to STDERR/OUT
FAIL EXIT CODE (LINE 102)
--> expected EX_OK, observed Unknown code: 1
Installed Giggle following instructions in the README; running Ubuntu 16.04.4 Xenial embedded in Windows 10. Ran test cases and fail 15/27. Looks like most of the passes shouldn't be passes at all, as giggle is throwing an error reading a file.
Anyone know what happened?
chapmano@Jarvis:~/giggle/test/func$ ./giggle_tests.sh /usr/bin/bedtools
check_intersections_per_file ran in 0 sec with 1/0 lines to STDERR/OUT FAIL EXIT CODE (LINE 41) --> expected EX_OK, observed EX_IOERR FAIL "0" != "1412" (LINE 42)
check_chr_v_nochr_search_1 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_2 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_3 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_4 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_5 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_6 ran in 1 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_7 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_8 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_9 ran in 0 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_chr_v_nochr_search_10 ran in 1 sec with 1/0 lines to STDERR/OUT FAIL "11" != "0" (LINE 55) giggle: Error reading file "../data/chr_mix_i/cache.0.idx": End of file PASS "0" == "0" (LINE 56)
check_bulk_insert ran in 0 sec with 0/23 lines to STDERR/OUT PASS "23" == "23" (LINE 79) giggle: Error reading file "../data/many_i/cache.0.idx": End of file FAIL "0" != "24" (LINE 80)
check_offset_additional_data ran in 1 sec with 1/0 lines to STDERR/OUT FAIL "72" != "0" (LINE 87) PASS "0" == "0" (LINE 88)
check_dense_index ran in 0 sec with 1/0 lines to STDERR/OUT FAIL EXIT CODE (LINE 102) --> expected EX_OK, observed Unknown code: 1
sshtest v0.1.5
27 Tests 15 Failures 12 Successes