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ryanlayer / samplot

Plot structural variant signals from many BAMs and CRAMs
MIT License
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error while installing #136

Open shuiyanwu778 opened 3 years ago

shuiyanwu778 commented 3 years ago

When I install samplot using "conda -c bioconda samplot", it always reports the error: "UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested package -> Available versions". Please help me with this problem. Thank you!

shuiyanwu778 commented 3 years ago

Hey, It's exciting that when I changed the mirror in conda and reset the python version, I installed samplot successfully. Now I got the images for some SVs but meanwhile I got some warnings as the following figure shows. Are there any uncorrected errors? image

Thanks, Cyan

jbelyeu commented 3 years ago

Sorry about the late response and glad you're having success now. The output you're seeing is informative rather than indicating error. It means that some of the variants in the VCF file are fairly small, so the region shown in the samplot image will be a bit larger relative to the SV than it would be otherwise. The tabix warning is potentially more important. As indicated it might be wise to index the VCF file with tabix.

shuiyanwu778 commented 3 years ago

Thank you for the reply and the tabix warning is also solved after sorting and indexing the vcf file. Thanks again for the help!