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ryanlayer / samplot

Plot structural variant signals from many BAMs and CRAMs
MIT License
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Plot just the split ends #152

Open aaksingh opened 2 years ago

aaksingh commented 2 years ago

Hello! I have been using Samplot since the past few days and it has proved to be very efficient. There are certain cases where split reads overlap with paired reads making it hard to visualise the structural variant. Is there a option if we just want to plot the split reads or the paired reads?

ryanlayer commented 2 years ago

We can add that. You may also try the —jitter option thanks to @pontushojer

On Feb 22, 2022, at 4:14 AM, aakankshasingh-evobio @.***> wrote:

 Hello! I have been using Samplot since the past few days and it has proved to be very efficient. There are certain cases where split ends overlap with paired ends making it hard to visualise the structural variant. Is there a option if we just want to plot the split ends or the paired ends?

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