ryanmelnyk / PyParanoid

Rapid and scalable homolog identification for bacterial genomes
MIT License
32 stars 7 forks source link

Update install instructions #3

Closed spleonard1 closed 6 years ago

spleonard1 commented 6 years ago

wonderful package I look forward to using it :)

Your install instructions for Mac Homebrew are out of date.

the homebrew science tap is deprecated, so the first install command results errors:

| => brew tap homebrew/science
Error: homebrew/science was deprecated. This tap is now empty as all its formulae were migrated.

The formula were moved: diamond, hmmer are in homebrew core mcl, cd-hit, muscle are in brewsci/bio

brew tap brewsci/bio 

will allow users to install the dependencies