Open bing170215 opened 2 years ago
Thanks for your attention. As for this issue, if you want to use our repo directly, please configure the corresponding environment according to the file of environment.yaml in this repo; otherwise, you need to adapt some code in this repo if you want to use the latest version of packages like pytorch_geometric.
Thanks for your attention. As for this issue, if you want to use our repo directly, please configure the corresponding environment according to the file of environment.yaml in this repo; otherwise, you need to adapt some code in this repo if you want to use the latest version of packages like pytorch_geometric.
Hi, I configure the corresponding environment according to the file of environment.yaml in this repo. I meet some mistakes.
When I directly run conda env create -f environment.yaml
, there is an error:
Collecting torch-spline-conv==1.1.1
Downloading https://files.pythonhosted.org/packages/5e/77/5420584cdb1514c580722ca4bc482a509105d64b7c70246e9dc4a3e6d3c5/torch_spline_conv-1.1.1.tar.gz
Pip subprocess error:
ERROR: Command errored out with exit status 1:
command: /home/anaconda3/envs/wsz/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-k6mu801_/torch-spline-conv/setup.py'"'"'; __file__='"'"'/tmp/pip-install-k6mu801_/torch-spline-conv/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-k6mu801_/torch-spline-conv/pip-egg-info
cwd: /tmp/pip-install-k6mu801_/torch-spline-conv/
Complete output (5 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-k6mu801_/torch-spline-conv/setup.py", line 2, in <module>
import torch
ModuleNotFoundError: No module named 'torch'
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
failed
CondaEnvException: Pip failed
After I change the channels
in the environment.yaml
, it works. But when I run from torch_geometric.data import DataLoader
, there is an error:
channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
>>> from torch_geometric.data import DataLoader
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_geometric/__init__.py", line 2, in <module>
import torch_geometric.nn
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_geometric/nn/__init__.py", line 2, in <module>
from .data_parallel import DataParallel
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_geometric/nn/data_parallel.py", line 5, in <module>
from torch_geometric.data import Batch
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_geometric/data/__init__.py", line 1, in <module>
from .data import Data
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_geometric/data/data.py", line 7, in <module>
from torch_sparse import coalesce
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_sparse/__init__.py", line 2, in <module>
from .coalesce import coalesce
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_sparse/coalesce.py", line 2, in <module>
import torch_scatter
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_scatter/__init__.py", line 3, in <module>
from .mul import scatter_mul
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_scatter/mul.py", line 3, in <module>
from torch_scatter.utils.ext import get_func
File "/home/anaconda3/envs/wsz/lib/python3.6/site-packages/torch_scatter/utils/ext.py", line 5, in <module>
import torch_scatter.scatter_cuda
ModuleNotFoundError: No module named 'torch_scatter.scatter_cuda'
I know how to fix the dataset loading error --> "The 'data' object was created by an older version of PyG".
You can just downgrade to torch-geometric==1.7.2 to load in the data, no reason to re-install torch-scatter, etc. Looks like @ryderling save pickle files which cannot be loaded within PyG 2.0