s-andrews FastQC issues

s-andrews / FastQC

A quality control analysis tool for high throughput sequencing data

GNU General Public License v3.0

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issues

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crash command

#92 estelabruxel closed 2 years ago
1
Add colourblind friendly palletes, activated with --colourblind

#91 jamesabbott closed 2 years ago
1
Headless exception-"No X11 DISPLAY variable was set"

#90 k1muk closed 2 years ago
2
Remove `*_fastqc.zip` file when using the `--extract` parameter

#89 dgomezpere closed 2 years ago
0
Add memory option

#88 jjkoehorst closed 2 years ago
1
Crash trying to process enormous index file

#87 s-andrews closed 2 years ago
0
"java.lang.OutOfMemoryError: Java heap space" with FastQC v0.11.9

#86 rzelle-lallemand closed 2 years ago
21
Update to Picard 2.26.7 to include fix for log4j exploit

#85 lostplan closed 2 years ago
2
FastQC run error

#84 juliemathari closed 2 years ago
6
Fastqc

#83 malar1102 closed 3 years ago
1
segmentation fault: 11

#82 masashi4u closed 3 years ago
3
Improve code quality

#81 Mikhail42 closed 3 years ago
1
How to run fastqc in various fastq.gz files, with different outputs

#80 eibol1 closed 3 years ago
5
Can´t install FastQC on ssh server

#79 eibol1 closed 3 years ago
3
Feature suggestion: use smarter method to determine file types for decompression.

#78 alanhoyle closed 2 years ago
2
command line run interrupted by set _JAVA_OPTIONS

#77 brobr closed 2 years ago
5
Allow user to specify amount of memory to use

#76 niemasd closed 2 years ago
1
Allow user to specify more than 250 MB/thread

#75 niemasd closed 2 years ago
10
Error not caught if children die from out of memory error

#74 didillysquat closed 3 years ago
6
No known encodings with chars < 33 (Yours was )

#73 mvheetve closed 3 years ago
4
Anyone working on xz support?

#72 outpaddling closed 2 years ago
11
Consider ContaminantHit#percentID in ContaminentFinder.java

#71 jbrokamp closed 3 years ago
1
ContaminantFinder is not returning best hit

#70 jbrokamp closed 3 years ago
1
how to solved key called ge_sequence?

#69 modarzi closed 3 years ago
11
Please provide a build system or some kind of Makefile for complete JAR

#68 zamaudio closed 3 years ago
9
Added Table of Contents and easy navigation to documentation.

#67 alanhoyle opened 3 years ago
0
Support separate analysis of R1/R2 in paried end BAM files

#66 s-andrews opened 3 years ago
1
Attempt to detect sorted input files

#65 s-andrews opened 3 years ago
1
Only the first 100,000 reads analyzed?

#64 smb20200615 closed 3 years ago
3
Installation issue of fastqc

#63 kiraxiaozhi closed 3 years ago
3
Improper handling of OOMKills

#62 jchorl closed 3 years ago
1
jhdf5.jar library flagged by some virus checkers

#61 s-andrews closed 2 years ago
0
some of failures of FastQC report

#60 lovelymaoqin closed 3 years ago
1
(.:19828): Gtk-WARNING **: cannot open display

#59 woaishiye closed 3 years ago
2
How to display total bases in FASTQC reports?

#58 KTbiotech closed 4 years ago
3
FastQC fails if all reads in the first tile have zero length

#57 trachtok closed 4 years ago
4
Mean of Phred score

#56 moritzschaefer closed 4 years ago
2
Overrepresented Sequence Count

#55 jrede closed 4 years ago
1
CRAM as input format?

#54 FriederikeHanssen opened 4 years ago
4
Duplicated sequences in contaminant_list.txt

#53 aushev opened 4 years ago
1
Wrong Illumina TruSeq adapter sequences in contaminant_list.txt?

#52 aushev opened 4 years ago
0
How to cite FastQC?

#51 Midnighter closed 4 years ago
2
Error: Unrecognized sequence format despite file being a fastq file

#50 TaylorLeigB closed 4 years ago
3
Error Insecure dependency when run FastQC

#49 tuandn8 closed 4 years ago
7
error when opening valid .fastq.bz2 (Ran out of data in the middle of a fastq entry. Your file is probably truncated)

#48 aushev opened 4 years ago
6
FASTQC in a pipeline

#47 OrielResearchCure closed 4 years ago
5
Automating fastqc in a pipeline

#46 Jospin-Dk closed 2 years ago
1
Exit with non-zero exit status on SequenceFormatException

#45 nathanweeks closed 2 years ago
17
Empty plots in HTML report

#44 soungalo opened 4 years ago
0
Empty files create output with no filename

#43 s-andrews closed 4 years ago
0

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