Pipeline fails to identify the short exons, particularly at the ends. The first exon of the of ENSMUST00000131374.8 is very short and Nexons misaligns this exon together with second exon.
We thought to have an alternative approach; add annotated short exons to the variants post-processing to see if it maps better in splice variant when we add short exons to variants (needs further discussion).
Pipeline fails to identify the short exons, particularly at the ends. The first exon of the of ENSMUST00000131374.8 is very short and Nexons misaligns this exon together with second exon.
We thought to have an alternative approach; add annotated short exons to the variants post-processing to see if it maps better in splice variant when we add short exons to variants (needs further discussion).