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s-andrews / nexons

A pipeline for quantitating transcript level abundances from nanopore sequence data
GNU General Public License v3.0
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Optimise chexons #13

Closed LouiseMatheson closed 1 year ago

LouiseMatheson commented 1 year ago

Now includes reverse complementation of reads for reverse strand genes; optimised parameters for chexons; identifying reverse splicing/mapping and removing end exon coordinates if only they are affected, or discarding if not (plus a couple of bug fixes)