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s-andrews / nextflow_pipelines

The set of NGS processing pipelines used at Babraham
GNU General Public License v3.0
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Updated code, added --single_end mode and added UmiBam #5

Closed FelixKrueger closed 4 years ago

FelixKrueger commented 4 years ago

Since I updated to the latest version of Nextflow we got some deprecation warnings. These are now fixed.

Also added a --single_end parameter for all pipelines.