Closed averagehat closed 8 years ago
Brilliant thanks! The only comment I would have is that lower case letters are often used for soft masking sequences so it is probably desirable that the sequence strings retain their case.
I've set up a branch (averagehat-master) based on your fork where the characters are upper-cased before checking but if they pass the original case is used in the string. I also amended the codon->aa and revcom functions in the alphabet file to upper-case characters before doing their thing. Also added a test for translation using lower-case letters. If you are happy with that I can merge into master.
Also added the repository to www.travis-ci.com.
Thanks!
closes #32
also tests string storage also travis-ci closes #34