Add an option to hts_NTrimmer that simply discards any read with an N

s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

https://s4hts.github.io/HTStream/

Apache License 2.0

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Add an option to hts_NTrimmer that simply discards any read with an N #176

Closed samhunter closed 4 years ago

samhunter commented 4 years ago

In theory this can more or less be achieved by having a min-length and trimming N's as the first step, but that strategy is a little bit clunky, so just discarding any read with N's is much clearer.

msettles commented 4 years ago

This issue was resolved with merge #178