s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
49 stars 9 forks source link

Main template #181

Closed joe-angell closed 4 years ago

joe-angell commented 4 years ago

Refactored all the programs so they derive from a main template that will contain all the file io boilerplate etc. Most of the changes are just tabing out the functions because they are in a class now.

Tested by diffing program args output and sample run of each program.