A change to primer app, to allow (fully) for 1 primer to be present and all operations work as expected. The original algorithm was build with the expectation that 2 primers would exist (always). changes are more general and allows 0, 1, or 2 primers to exist.
Flip, flips a read now look for both 5' and 3' primers (used to be only 5')
in json stats, flipped count is now based on output reads.
A change to primer app, to allow (fully) for 1 primer to be present and all operations work as expected. The original algorithm was build with the expectation that 2 primers would exist (always). changes are more general and allows 0, 1, or 2 primers to exist.
Flip, flips a read now look for both 5' and 3' primers (used to be only 5')
in json stats, flipped count is now based on output reads.
Lots of Unit tests added