strived for consistency in order and naming, reworked a couple of counter functions to reduce code.
Looks NICE!
removed the pid from application names in json
moved check_write of json file out of counter and into main_template (helps with unit tests that use counters)
removed all Fragment/PE/SE/R1/R2 prefixes from names
Created Read1/Read2 block within Paired_end block and moved variables within
created Fragment block
moved Fragment related variables to Fragment block
created new Program_details block
moved program variables to Program_details block
added command line options section in Program_details block
added prefix to string2fasta
strived for consistency in order and naming, reworked a couple of counter functions to reduce code. Looks NICE!
removed the pid from application names in json moved check_write of json file out of counter and into main_template (helps with unit tests that use counters) removed all Fragment/PE/SE/R1/R2 prefixes from names Created Read1/Read2 block within Paired_end block and moved variables within created Fragment block moved Fragment related variables to Fragment block created new Program_details block moved program variables to Program_details block added command line options section in Program_details block added prefix to string2fasta