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s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
49 stars 9 forks source link

Regression script #213

Closed joe-angell closed 4 years ago

joe-angell commented 4 years ago

simple regression script to run all the programs with default parameters and stores the output. When a pr is created, the regression test will run comparing the output, if the output has changed it will fail. Upon fail the user must update the regression data by running the regression script with the regen parameter, (after validating that the differences are good).

joe-angell commented 4 years ago

@msettles @samhunter @dstreett I'm going to call this good for now unless you have any comments. It seems something is going on with superDeduper, it is outputting a different number of reads on the github regression than it is locally or on sam's machines. I don't know why that is yet, but I'll continue to look into that and address it in another pr.

joe-angell commented 4 years ago

Yay all fixed, @dstreett remember virtual functions must be virtual, and virtual classes need virtual destructors, ;P. I should probably look for some others that i missed.