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s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
49 stars 9 forks source link

N-trimmer might have an overflow on Right bp trim #215

Open msettles opened 4 years ago

msettles commented 4 years ago 
"Paired_end": {
    "in": 59766627,
    "out": 59766627,
    "discarded": 0,
    "Read1": {
        "basepairs_in": 2305056164,
        "basepairs_out": 2306023101,
        "leftTrim": 1887576,
        "rightTrim": 18446744073706697103. <-----
    },
    "Read2": {
        "basepairs_in": 6036429327,
        "basepairs_out": 6028476739,
        "leftTrim": 7335460,
        "rightTrim": 617128
    }
joe-angell commented 4 years ago

what version?

msettles commented 4 years ago

Should be in master, I'm on a different branch, but merged master this morning and have made no modifications to N-trimmer

joe-angell commented 4 years ago

Yeah I cannot reproduce this, any chance you could get the read in question and the parameters used for ntrimmer?