s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
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hts_Primer doesn't report fragments and basepairs_in #229

Closed msettles closed 4 years ago

msettles commented 4 years ago

Describe the bug , "Fragment": { "in": 0, "out": 7877, "basepairs_in": 0, "basepairs_out": 4408656, "flipped": 3268, "primers_counts": [ ["p5primer2","p3primer1",1], ["p5primer1","p3primer2",1], ["p5primer1","None",114], ["None","None",33], ["None","p3primer1",1976], ["p5primer1","p3primer1",7875] ] }, To Reproduce Example sequence reads that will help reproduce the bug:

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