Closed samhunter closed 4 years ago
For example, when screening for PhiX, the percentage-hits is reported as 0.25, but there are only 15 hits/ 5000000 reads (0.0003%).
"Program_details": { "program": "hts_SeqScreener", "version": "v1.3.2", "options": { "append-stats-file": "01-HTS_Preproc/mouse_110_WT_C/mouse_110_WT_C.json", "check-read-2": false, "force": false, "inverse": false, "kmer": 12, "notes": "screen phix", "percentage-hits": 0.25, "record": false, "uncompressed": false }, "screen_info": { "screenBP": 5386, "lookupKmers": 5372 } }, "Fragment": { "in": 5000000, "out": 4999985, "basepairs_in": 1010000000, "basepairs_out": 1009996970 }, "Single_end": { "in": 0, "out": 0, "basepairs_in": 0, "basepairs_out": 0, "hits": 0 }, "Paired_end": { "in": 5000000, "out": 4999985, "hits": 15, "Read1": { "basepairs_in": 505000000, "basepairs_out": 504998485 }, "Read2": { "basepairs_in": 505000000, "basepairs_out": 504998485 } }
}
Never mind.. that is in the "options": {} section...
For example, when screening for PhiX, the percentage-hits is reported as 0.25, but there are only 15 hits/ 5000000 reads (0.0003%).
}