search

s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
49 stars 9 forks source link

How to cite HTStream? :-) #243

Closed mickey-spongebob closed 3 years ago

mickey-spongebob commented 3 years ago

Dear HTStream team :-)

Hope this finds you well. Thank you for the really nice tool! I would like to cite HTStream (I specifically used SuperDeduper) but I'm not sure how to do it. I found the original work [https://dl.acm.org/doi/10.1145/2808719.2811568] (I assume). Should I go with this or would you (your team) prefer a different more updated way to acknowledge your work :-)

Cheers :-)

samhunter commented 3 years ago

Hi Mickey,

The algorithm and idea is the same, and most of the authors are the same, we just re-implemented in HTStream. It might be best to cite that publication with a link to the GitHub repo. Maybe something like:

"Duplicate reads were discarded using SuperDeduper (Petersen 2015, re-implemented as part of HTStream, https://github.com/s4hts/HTStream)."

But that's just a suggestion.

Sam

mickey-spongebob commented 3 years ago

Hi Sam,

Thank you so much! :-)

Take care and wishing you well!

Cheers :-)