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s4hts / HTStream

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
49 stars 9 forks source link

citation? #245

Closed Tgrandis closed 2 years ago

Tgrandis commented 2 years ago

Hello. Thanks for making superdeduper available here. I use this programme for cleaning up WGS reads and thus I would like to ackmowledge the developers in publication. However, I could not find a reference for the hts-superdeduper programme on the Github site or in the readme documentation or anywhere else for that matter. Please provide a citation (in the readme file or elsewhere) so that users can give you credit for the work you have done. Thanks in advance, Hugo

samhunter commented 2 years ago

Hi Hugo,

Thanks for your suggestion. I'm glad that HTStream has been useful for you, and thank you for acknowledging our hard work in making it available! Unfortunately we don't have a publication quite yet. Please just cite the GitHub page for now. I have updated the readme to reflect this, and also added a citation to an earlier implementation of the SuperDeduper algorithm.

Tgrandis commented 2 years ago

Hi Sam:

Thanks for the reaction. I appreciate that.

I will follow your suggestions when referencing the use of the programme.

Greetings,

Hugo

On 2021-09-19 12:34, Sam Hunter wrote:

Hi Hugo,

Thanks for your suggestion. I'm glad that HTStream has been useful for you, and thank you for acknowledging our hard work in making it available! Unfortunately we don't have a publication quite yet. Please just cite the GitHub page for now. I have updated the readme to reflect this, and also added a citation to an earlier implementation of the SuperDeduper algorithm.

-- You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub [1], or unsubscribe [2]. Triage notifications on the go with GitHub Mobile for iOS [3] or Android [4].

-- Hugo A. Volkaert Center for Agricultural Biotechnology Kasetsart University Kamphaengsaen Campus Kamphaengsaen, Nakhonpathom Thailand 73140 phone: +66 34353217 fax: +66 34353222

Links:

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