sa-lee starmie issues - Githubissues

sa-lee / starmie

starmie: plotting and inference for population structure models :star2:

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issues

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Cannot load structure output

#46 jdmontenegro opened 4 years ago
0
loadStructure introducing NAs

#45 dionnecargy opened 4 years ago
0
averagePairWiseSimilarityH

#44 csmiguel opened 5 years ago
0
Loading multiple files at once

#43 markusruhsam opened 6 years ago
2
populations parameter should be a character vector

#42 gtonkinhill opened 7 years ago
0
bug: subsetting an admixList/structList/fastList to a single object returns a list

#41 sa-lee opened 7 years ago
0
Merge branch 'master' of https://github.com/sa-lee/starmie into dev

#40 sa-lee closed 7 years ago
0
Dev in line with master

#39 sa-lee closed 7 years ago
0
Clumpp needs to handle k=1 gracefully

#38 gtonkinhill closed 7 years ago
1
loadAdmixture fails on the log files if cv hasnt been run.

#37 gtonkinhill closed 7 years ago
1
Add in bootstrapping support for admixture

#36 gtonkinhill closed 7 years ago
1
first pass at fineStructure methods

#35 sa-lee closed 7 years ago
0
fixes #31

#34 sa-lee closed 7 years ago
0
plot methods should return ggplot object

#33 sa-lee opened 7 years ago
0
doc updates, reducing dependencies

#32 sa-lee closed 7 years ago
0
functions that make use of function from another library only once should be in suggests

#31 sa-lee closed 7 years ago
0
cody tidy up before release

#30 sa-lee closed 7 years ago
0
inputs to functions should take struct, admix or Q matrix (either as lists or individually)

#29 sa-lee closed 7 years ago
2
test loadStructure output on other STRUCTURE models

#28 sa-lee closed 7 years ago
2
correlation metric for label switching problem

#27 sa-lee opened 7 years ago
0
add phlyogentic trees to bar plots

#26 sa-lee closed 7 years ago
0
clean up bestK function

#25 sa-lee closed 8 years ago
0
reduce package size

#24 sa-lee closed 7 years ago
2
print method for struct object

#23 sa-lee closed 8 years ago
0
local shiny interface

#22 sa-lee opened 8 years ago
4
simulate Q matrix with repeated runs from dirichlet distribution

#21 sa-lee opened 8 years ago
2
starmieList object?

#20 sa-lee closed 7 years ago
3
cleaner example datasets

#19 sa-lee closed 8 years ago
0
label switching package

#18 gtonkinhill closed 7 years ago
0
clumpak

#17 sa-lee closed 7 years ago
1
Generate STRUCTURE minimal files

#16 sa-lee opened 8 years ago
0
fixed k-means for looking at best permutation

#15 sa-lee closed 7 years ago
5
Bug: clummp greedyLargeK broken

#14 sa-lee closed 8 years ago
1
Bug: loadStructure deletes sample/pop labels if they are non-numeric

#13 sa-lee closed 7 years ago
0
Vignette preparation

#12 sa-lee closed 7 years ago
2
Accessor methods for starmie objects

#11 sa-lee closed 8 years ago
1
Convert Admixture inputs to Structure and vice versa

#10 gtonkinhill opened 8 years ago
0
Enhancement: fun coding exercise rewrite STRUCTURE in C++/R

#9 sa-lee closed 8 years ago
0
diagnostic plots

#8 sa-lee closed 8 years ago
0
test datasets

#7 sa-lee closed 8 years ago
3
Other visualisation methods

#6 sa-lee opened 8 years ago
2
simulate from STRUCTURE model

#5 sa-lee opened 8 years ago
0
Estimate the best K

#4 gtonkinhill closed 8 years ago
6
Generate barplot

#3 gtonkinhill closed 8 years ago
2
Load Structure Data

#2 gtonkinhill closed 8 years ago
4
Load Admixture Data

#1 gtonkinhill closed 8 years ago
15