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saalfeldlab / CNNectome

Scripts for building, training and validating CNNs for Connectomics
BSD 2-Clause "Simplified" License
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Some puzzles about the data #2

Closed artzjj closed 5 years ago

artzjj commented 5 years ago

data "volumes/masks/groundtruth" in Line 29 in CNNectome/training/isotropic/train_dist.py can not be found in cremi dataset downloaded from https://cremi.org/data/. And how can I get the data used in your code? Thanks!

neptunes5thmoon commented 5 years ago

You can see how I generated volumes/masks/groundtruth in utils/rewrite_mask.py. It is a mask for where groundtruth annotations exist, which is helpful for working with realigned data.