search

saalfeldlab / CNNectome

Scripts for building, training and validating CNNs for Connectomics
BSD 2-Clause "Simplified" License
12 stars 9 forks source link

Python 2->3; Black formatting; Docker -> Singularity #4

Closed d-v-b closed 5 years ago

d-v-b commented 5 years ago

A lot of changes in 1 PR, sorry about that.

-- Ran 2to3 to update from py27 to 3.7. Mostly untested :skull: -- ran the black formatting tool -- Changed the dockerfile such that it is compatible with the janelia GPU cluster and tensorflow 1.3

d-v-b commented 5 years ago

the dockerfile now uses conda to install tensorflow; we might also have an easier time getting z5py via conda rather than building from source, this would shrink the dockerfile considerably.

neptunes5thmoon commented 5 years ago

That's a good idea, but we can do that in a separate PR