Better look-up-table support

saalfeldlab / bigwarp

A tool for manual pointwise deformable registration using bigdataviewer.

GNU General Public License v2.0

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Better look-up-table support #78

Open bogovicj opened 5 years ago

bogovicj commented 5 years ago

[ ] Exported ImagePlus' should have the correct LUT
[ ] Support more general LUTs in bigdataviewer

tischi commented 4 years ago

Hi @bogovicj please let me know when you work on "Support more general LUTs in bigdataviewer", this is definitely something I am very interested in as well.

I think this is closely related to this: https://github.com/bigdataviewer/bigdataviewer-vistools/pull/40 Because without this, we cannot freely design our own converters and thus also not apply more general LUTs.
And I already started working on LUTs for BDV, e.g. here: https://github.com/tischi/bdv-utils/tree/master/src/main/java/de/embl/cba/bdv/utils/lut

bogovicj commented 4 years ago

@tischi

Thanks for pointing me to those things. I had not yet looked around to see what work has been done where, and so those are very helpful. Maybe the stuff in (2) can be merged into one of the imglib2 repositories. It's just hard to know what exists where.

For example, I have not used these yet: https://github.com/imglib/imglib2/tree/master/src/main/java/net/imglib2/display

Anyway, I'll be sure to mention you again when I'm really ready to work on it :)