n5 does not compile with Java 9/10

hanslovsky commented 6 years ago

JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn clean package
[INFO] Scanning for projects...
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Building N5 2.0.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ n5 ---
[INFO] Deleting /home/hanslovskyp/git/n5/target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ n5 ---
[INFO] Skipping Rule Enforcement.
[INFO] 
[INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ n5 ---
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ n5 ---
[INFO] Executing: /bin/sh -c cd '/home/hanslovskyp/git/n5' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/hanslovskyp/git/n5
[INFO] Storing buildNumber: 2423e9af3881e07d936e2f4122d80729d0668624 at timestamp: 1529442702406
[INFO] Storing buildScmBranch: master
[INFO] 
[INFO] --- scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) @ n5 ---
[INFO] Setting rootdir: /home/hanslovskyp/git/n5
[INFO] 
[INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ n5 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/hanslovskyp/git/n5/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ n5 ---
[INFO] Compiling 27 source files to /home/hanslovskyp/git/n5/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType
        at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92)
        at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
        at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116)
        at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215)
        at java.base/java.nio.file.Files.newByteChannel(Files.java:369)
        at java.base/java.nio.file.Files.newByteChannel(Files.java:415)
        at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384)
        at java.base/java.nio.file.Files.newInputStream(Files.java:154)

hanslovsky commented 6 years ago

`JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn -X clean package` (1639 lines)

``` Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00) Maven home: /opt/maven Java version: 9.0.4, vendor: Oracle Corporation Java home: /usr/lib/jvm/java-9-openjdk Default locale: en_US, platform encoding: UTF-8 OS name: "linux", version: "4.16.8-1-arch", arch: "amd64", family: "unix" [DEBUG] Created new class realm maven.api [DEBUG] Importing foreign packages into class realm maven.api [DEBUG] Imported: javax.annotation.* < plexus.core [DEBUG] Imported: javax.enterprise.inject.* < plexus.core [DEBUG] Imported: javax.enterprise.util.* < plexus.core [DEBUG] Imported: javax.inject.* < plexus.core [DEBUG] Imported: org.apache.maven.* < plexus.core [DEBUG] Imported: org.apache.maven.artifact < plexus.core [DEBUG] Imported: org.apache.maven.classrealm < plexus.core [DEBUG] Imported: org.apache.maven.cli < plexus.core [DEBUG] Imported: org.apache.maven.configuration < plexus.core [DEBUG] Imported: org.apache.maven.exception < plexus.core [DEBUG] Imported: org.apache.maven.execution < plexus.core [DEBUG] Imported: org.apache.maven.execution.scope < plexus.core [DEBUG] Imported: org.apache.maven.lifecycle < plexus.core [DEBUG] Imported: org.apache.maven.model < plexus.core [DEBUG] Imported: org.apache.maven.monitor < plexus.core [DEBUG] Imported: org.apache.maven.plugin < plexus.core [DEBUG] Imported: org.apache.maven.profiles < plexus.core [DEBUG] Imported: org.apache.maven.project < plexus.core [DEBUG] Imported: org.apache.maven.reporting < plexus.core [DEBUG] Imported: org.apache.maven.repository < plexus.core [DEBUG] Imported: org.apache.maven.rtinfo < plexus.core [DEBUG] Imported: org.apache.maven.settings < plexus.core [DEBUG] Imported: org.apache.maven.toolchain < plexus.core [DEBUG] Imported: org.apache.maven.usability < plexus.core [DEBUG] Imported: org.apache.maven.wagon.* < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core [DEBUG] Imported: org.apache.maven.wagon.events < plexus.core [DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core [DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core [DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core [DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core [DEBUG] Imported: org.codehaus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.* < plexus.core [DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.component < plexus.core [DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core [DEBUG] Imported: org.codehaus.plexus.container < plexus.core [DEBUG] Imported: org.codehaus.plexus.context < plexus.core [DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core [DEBUG] Imported: org.codehaus.plexus.logging < plexus.core [DEBUG] Imported: org.codehaus.plexus.personality < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core [DEBUG] Imported: org.eclipse.aether.* < plexus.core [DEBUG] Imported: org.eclipse.aether.artifact < plexus.core [DEBUG] Imported: org.eclipse.aether.collection < plexus.core [DEBUG] Imported: org.eclipse.aether.deployment < plexus.core [DEBUG] Imported: org.eclipse.aether.graph < plexus.core [DEBUG] Imported: org.eclipse.aether.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.installation < plexus.core [DEBUG] Imported: org.eclipse.aether.internal.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.metadata < plexus.core [DEBUG] Imported: org.eclipse.aether.repository < plexus.core [DEBUG] Imported: org.eclipse.aether.resolution < plexus.core [DEBUG] Imported: org.eclipse.aether.spi < plexus.core [DEBUG] Imported: org.eclipse.aether.transfer < plexus.core [DEBUG] Imported: org.eclipse.aether.version < plexus.core [DEBUG] Imported: org.fusesource.jansi.* < plexus.core [DEBUG] Imported: org.slf4j.* < plexus.core [DEBUG] Imported: org.slf4j.helpers.* < plexus.core [DEBUG] Imported: org.slf4j.spi.* < plexus.core [DEBUG] Populating class realm maven.api [INFO] Error stacktraces are turned on. [DEBUG] Message scheme: color [DEBUG] Message styles: debug info warning error success failure strong mojo project [DEBUG] Reading global settings from /opt/maven/conf/settings.xml [DEBUG] Reading user settings from /home/hanslovskyp/.m2/settings.xml [DEBUG] Reading global toolchains from /opt/maven/conf/toolchains.xml [DEBUG] Reading user toolchains from /home/hanslovskyp/.m2/toolchains.xml [DEBUG] Using local repository at /home/hanslovskyp/.m2/repository [DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10.0 for /home/hanslovskyp/.m2/repository [INFO] Scanning for projects... [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=888099, ConflictMarker.markTime=487630, ConflictMarker.nodeCount=17, ConflictIdSorter.graphTime=513402, ConflictIdSorter.topsortTime=436227, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=4133751, ConflictResolver.conflictItemCount=16, DefaultDependencyCollector.collectTime=92258971, DefaultDependencyCollector.transformTime=8754016} [DEBUG] org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0: [DEBUG] org.apache.maven.wagon:wagon-http-shared:jar:1.0:compile [DEBUG] commons-httpclient:commons-httpclient:jar:3.1:compile [DEBUG] commons-codec:commons-codec:jar:1.2:compile [DEBUG] commons-logging:commons-logging:jar:1.1.1:compile [DEBUG] commons-io:commons-io:jar:2.0.1:compile [DEBUG] org.jsoup:jsoup:jar:1.6.1:compile [DEBUG] org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0:compile [DEBUG] org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0:compile [DEBUG] org.slf4j:slf4j-api:jar:1.5.3:compile [DEBUG] org.slf4j:slf4j-nop:jar:1.5.3:runtime [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:1.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:1.4.2:compile [DEBUG] Created new class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Importing foreign packages into class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Imported: < maven.api [DEBUG] Populating class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-http-shared:jar:1.0 [DEBUG] Included: commons-httpclient:commons-httpclient:jar:3.1 [DEBUG] Included: commons-codec:commons-codec:jar:1.2 [DEBUG] Included: commons-logging:commons-logging:jar:1.1.1 [DEBUG] Included: commons-io:commons-io:jar:2.0.1 [DEBUG] Included: org.jsoup:jsoup:jar:1.6.1 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0 [DEBUG] Included: org.slf4j:slf4j-nop:jar:1.5.3 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.4.2 [DEBUG] Extension realms for project org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Created new class realm project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Looking up lifecycle mappings for packaging jar from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava:pom:19.2.0: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava-base:pom:3.2.0: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] === REACTOR BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] Tasks: [clean, package] [DEBUG] Style: Regular [DEBUG] ======================================================================= [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building N5 2.0.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] === PROJECT BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Dependencies (collect): [test] [DEBUG] Dependencies (resolve): [compile, runtime, test] [DEBUG] Repositories (dependencies): [imagej.public (https://maven.imagej.net/content/groups/public, default, releases+snapshots), central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean (default-clean) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.clean.excludeDefaultDirectories} ${maven.clean.failOnError} ${maven.clean.followSymLinks} ${maven.clean.retryOnError} ${maven.clean.skip} ${maven.clean.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce (enforce-rules) [DEBUG] Style: Regular [DEBUG] Configuration: ${enforcer.fail} ${enforcer.failFast} ${enforcer.ignoreCache} 3.0.4 Plugins need to be versioned! 1.8.0-101 No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. true founder,lead,developer,debugger,reviewer,support,maintainer founder,lead,developer,debugger,reviewer,support,maintainer 1.8 com.headius:invokebinder com.sun:tools test name description url inceptionYear organization licenses developers contributors mailingLists scm issueManagement ciManagement properties//license.licenseName properties//license.copyrightOwners org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji ${enforcer.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 2.0.3-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources (default-resources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.resources.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.main.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:testResources (default-testResources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:testCompile (default-testCompile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.test.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 ${maven.compiler.testRelease} 1.8 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test (default-test) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.additionalClasspath} -Xms512m -Xmx512m -Dapple.awt.UIElement="true" ${childDelegation} ${maven.test.dependency.excludes} ${maven.surefire.debug} ${dependenciesToScan} ${disableXmlReport} ${enableAssertions} ${excludedGroups} ${surefire.excludesFile} ${surefire.failIfNoSpecifiedTests} ${failIfNoTests} ${forkCount} ${forkMode} ${surefire.timeout} ${groups} ${surefire.includesFile} ${junitArtifactName} ${jvm} ${objectFactory} ${parallel} ${parallelOptimized} ${surefire.parallel.forcedTimeout} ${surefire.parallel.timeout} ${perCoreThreadCount} ${plugin.artifactMap} ${surefire.printSummary} ${project.artifactMap} ${maven.test.redirectTestOutputToFile} ${surefire.reportFormat} ${surefire.reportNameSuffix} ${surefire.rerunFailingTestsCount} ${reuseForks} ${surefire.runOrder} ${surefire.shutdown} ${maven.test.skip} ${surefire.skipAfterFailureCount} ${maven.test.skip.exec} ${skipTests} ${surefire.suiteXmlFiles} ${test} ${maven.test.failure.ignore} ${testNGArtifactName} ${threadCount} ${threadCountClasses} ${threadCountMethods} ${threadCountSuites} ${trimStackTrace} ${surefire.useFile} ${surefire.useManifestOnlyJar} ${surefire.useSystemClassLoader} ${useUnlimitedThreads} ${basedir} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:jar (default-jar) [DEBUG] Style: Regular [DEBUG] Configuration: true true true org.janelia.saalfeldlab

${buildNumber}

2018-06-19T21:13:40+0000

${maven.jar.classifier} ${jar.finalName} ${jar.forceCreation} true ${jar.useDefaultManifestFile} [DEBUG] --- init fork of org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] Dependencies (collect): [test] [DEBUG] Dependencies (resolve): [] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce (enforce-rules) [DEBUG] Style: Regular [DEBUG] Configuration: ${enforcer.fail} ${enforcer.failFast} ${enforcer.ignoreCache} 3.0.4 Plugins need to be versioned! 1.8.0-101 No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. true founder,lead,developer,debugger,reviewer,support,maintainer founder,lead,developer,debugger,reviewer,support,maintainer 1.8 com.headius:invokebinder com.sun:tools test name description url inceptionYear organization licenses developers contributors mailingLists scm issueManagement ciManagement properties//license.licenseName properties//license.copyrightOwners org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji ${enforcer.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 2.0.3-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] --- exit fork of org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.source.attach} ${maven.source.classifier} ${maven.source.excludeResources} ${maven.source.forceCreation} ${maven.source.includePom} ${maven.source.skip} ${maven.source.useDefaultExcludes} ${maven.source.useDefaultManifestFile} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:test-jar (default) [DEBUG] Style: Regular [DEBUG] Configuration: true true true org.janelia.saalfeldlab

${buildNumber}

2018-06-19T21:13:40+0000

${jar.finalName} ${jar.forceCreation} ${maven.test.skip} true ${jar.useDefaultManifestFile} [DEBUG] ======================================================================= [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=168596, ConflictMarker.markTime=86044, ConflictMarker.nodeCount=27, ConflictIdSorter.graphTime=48050, ConflictIdSorter.topsortTime=25003, ConflictIdSorter.conflictIdCount=21, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2159066, ConflictResolver.conflictItemCount=26, DefaultDependencyCollector.collectTime=133909656, DefaultDependencyCollector.transformTime=2508551} [DEBUG] org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] org.tukaani:xz:jar:1.6:compile [DEBUG] org.apache.commons:commons-compress:jar:1.14:compile [DEBUG] net.jpountz.lz4:lz4:jar:1.3.0:compile [DEBUG] com.google.code.gson:gson:jar:2.8.2:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] net.imagej:ij:jar:1.51s:test (exclusions managed) [DEBUG] net.imglib2:imglib2:jar:4.6.1:test [DEBUG] net.imglib2:imglib2-ij:jar:2.0.0-beta-39:test [DEBUG] net.imagej:imagej-common:jar:0.24.9:test (version managed from 0.24.9) [DEBUG] net.imglib2:imglib2-roi:jar:0.4.7:test (version managed from 0.4.6) [DEBUG] net.sf.trove4j:trove4j:jar:3.0.3:test (version managed from 3.0.3) [DEBUG] edu.ucar:udunits:jar:4.3.18:test [DEBUG] cisd:jhdf5:jar:14.12.6:test [DEBUG] commons-lang:commons-lang:jar:2.4:test [DEBUG] commons-io:commons-io:jar:2.6:test (version managed from 1.4) [DEBUG] org.apache.commons:commons-collections4:jar:4.1:test [DEBUG] org.scijava:scijava-common:jar:2.69.0:compile [DEBUG] org.scijava:parsington:jar:1.0.1:compile (version managed from 1.0.1) [DEBUG] com.googlecode.gentyref:gentyref:jar:1.1.0:compile [DEBUG] org.bushe:eventbus:jar:1.4:compile [INFO] [INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=99663, ConflictMarker.markTime=48889, ConflictMarker.nodeCount=15, ConflictIdSorter.graphTime=28984, ConflictIdSorter.topsortTime=20883, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=598328, ConflictResolver.conflictItemCount=15, DefaultDependencyCollector.collectTime=53231936, DefaultDependencyCollector.transformTime=823426} [DEBUG] org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Included: org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean' with basic configurator --> [DEBUG] (f) directory = /home/hanslovskyp/git/n5/target [DEBUG] (f) excludeDefaultDirectories = false [DEBUG] (f) failOnError = true [DEBUG] (f) followSymLinks = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) reportDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) retryOnError = true [DEBUG] (f) skip = false [DEBUG] (f) testOutputDirectory = /home/hanslovskyp/git/n5/target/test-classes [DEBUG] -- end configuration -- [INFO] Deleting /home/hanslovskyp/git/n5/target [INFO] Deleting directory /home/hanslovskyp/git/n5/target/classes [INFO] Deleting directory /home/hanslovskyp/git/n5/target/generated-sources/annotations [INFO] Deleting directory /home/hanslovskyp/git/n5/target/generated-sources [INFO] Deleting directory /home/hanslovskyp/git/n5/target [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/test-classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/classes [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=2400297, ConflictMarker.markTime=458716, ConflictMarker.nodeCount=319, ConflictIdSorter.graphTime=1166205, ConflictIdSorter.topsortTime=112933, ConflictIdSorter.conflictIdCount=53, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=5352478, ConflictResolver.conflictItemCount=133, DefaultDependencyCollector.collectTime=182671626, DefaultDependencyCollector.transformTime=9619695} [DEBUG] org.apache.maven.plugins:maven-enforcer-plugin:jar:1.4.1: [DEBUG] org.codehaus.mojo:extra-enforcer-rules:jar:1.0-beta-6:runtime [DEBUG] org.apache.maven:maven-model:jar:2.0.9:compile [DEBUG] org.apache.maven.shared:maven-dependency-tree:jar:2.2:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9:compile [DEBUG] org.apache.maven.shared:maven-common-artifact-filters:jar:1.4:compile [DEBUG] com.ibm.icu:icu4j:jar:56.1:runtime [DEBUG] org.scijava:scijava-maven-plugin:jar:1.0.0:runtime [DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3:provided [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.22:compile [DEBUG] commons-lang:commons-lang:jar:2.3:compile [DEBUG] org.apache.maven.enforcer:enforcer-api:jar:1.4.1:compile [DEBUG] org.apache.maven.enforcer:enforcer-rules:jar:1.4.1:compile [DEBUG] org.beanshell:bsh:jar:2.0b4:compile [DEBUG] org.codehaus.plexus:plexus-i18n:jar:1.0-beta-6:compile [DEBUG] org.apache.maven.plugin-testing:maven-plugin-testing-harness:jar:1.3:compile [DEBUG] org.codehaus.plexus:plexus-archiver:jar:2.2:compile [DEBUG] org.codehaus.plexus:plexus-io:jar:2.0.4:compile [DEBUG] junit:junit:jar:4.11:compile [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Included: org.apache.maven.plugins:maven-enforcer-plugin:jar:1.4.1 [DEBUG] Included: org.codehaus.mojo:extra-enforcer-rules:jar:1.0-beta-6 [DEBUG] Included: org.apache.maven.shared:maven-dependency-tree:jar:2.2 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.eclipse.aether:aether-util:jar:0.9.0.M2 [DEBUG] Included: org.apache.maven.shared:maven-common-artifact-filters:jar:1.4 [DEBUG] Included: com.ibm.icu:icu4j:jar:56.1 [DEBUG] Included: org.scijava:scijava-maven-plugin:jar:1.0.0 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.22 [DEBUG] Included: commons-lang:commons-lang:jar:2.3 [DEBUG] Included: org.apache.maven.enforcer:enforcer-api:jar:1.4.1 [DEBUG] Included: org.apache.maven.enforcer:enforcer-rules:jar:1.4.1 [DEBUG] Included: org.beanshell:bsh:jar:2.0b4 [DEBUG] Included: org.codehaus.plexus:plexus-i18n:jar:1.0-beta-6 [DEBUG] Included: org.apache.maven.plugin-testing:maven-plugin-testing-harness:jar:1.3 [DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:2.2 [DEBUG] Included: org.codehaus.plexus:plexus-io:jar:2.0.4 [DEBUG] Included: junit:junit:jar:4.11 [DEBUG] Included: org.hamcrest:hamcrest-core:jar:1.3 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce' with basic configurator --> [DEBUG] (s) fail = true [DEBUG] (s) failFast = false [DEBUG] (f) ignoreCache = false [DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce {execution: enforce-rules} [DEBUG] (s) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (s) version = 3.0.4 [DEBUG] (s) message = Plugins need to be versioned! [DEBUG] (s) version = 1.8.0-101 [DEBUG] (f) message = No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. [DEBUG] (f) findAllDuplicates = true [DEBUG] (f) validRoles = founder,lead,developer,debugger,reviewer,support,maintainer [DEBUG] (f) validRoles = founder,lead,developer,debugger,reviewer,support,maintainer [DEBUG] (f) maxJdkVersion = 1.8 [DEBUG] (f) excludes = [com.headius:invokebinder, com.sun:tools] [DEBUG] (f) ignoredScopes = [test] [DEBUG] (f) elements = [name, description, url, inceptionYear, organization, licenses, developers, contributors, mailingLists, scm, issueManagement, ciManagement, properties//license.licenseName, properties//license.copyrightOwners] [DEBUG] (f) groupIds = org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji [DEBUG] (s) rules = [org.apache.maven.plugins.enforcer.RequireMavenVersion@435e60ff, org.apache.maven.plugins.enforcer.RequirePluginVersions@17d32e9b, org.apache.maven.plugins.enforcer.RequireJavaVersion@66f0548d, org.apache.maven.plugins.enforcer.BanDuplicateClasses@2e6f610d, org.apache.maven.plugins.enforcer.RequireDeveloperRoles@1e86a5a7, org.apache.maven.plugins.enforcer.RequireContributorRoles@10afe71a, org.apache.maven.plugins.enforcer.EnforceBytecodeVersion@741f8dbe, org.apache.maven.plugins.enforcer.BanCircularDependencies@212dfd39, org.scijava.maven.plugin.enforcer.RequireElements@a2ddf26, org.scijava.maven.plugin.enforcer.RequireReproducibleBuilds@65d57e4e] [DEBUG] (s) session = org.apache.maven.execution.MavenSession@6daf7d37 [DEBUG] (s) skip = true [DEBUG] -- end configuration -- [INFO] Skipping Rule Enforcement. [INFO] [INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=275733, ConflictMarker.markTime=130463, ConflictMarker.nodeCount=166, ConflictIdSorter.graphTime=169574, ConflictIdSorter.topsortTime=90654, ConflictIdSorter.conflictIdCount=52, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2458055, ConflictResolver.conflictItemCount=107, DefaultDependencyCollector.collectTime=53377275, DefaultDependencyCollector.transformTime=3168129} [DEBUG] org.codehaus.mojo:build-helper-maven-plugin:jar:1.12: [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.beanshell:bsh:jar:2.0b4:compile [DEBUG] org.apache.maven.shared:file-management:jar:3.0.0:compile [DEBUG] org.apache.maven.shared:maven-shared-io:jar:3.0.0:compile [DEBUG] org.apache.maven:maven-compat:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:2.10:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Included: org.codehaus.mojo:build-helper-maven-plugin:jar:1.12 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.beanshell:bsh:jar:2.0b4 [DEBUG] Included: org.apache.maven.shared:file-management:jar:3.0.0 [DEBUG] Included: org.apache.maven.shared:maven-shared-io:jar:3.0.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property from plugin realm ClassRealm[plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property' with basic configurator --> [DEBUG] (f) failIfNoMatch = false [DEBUG] (f) name = sanitizedVersion [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) regex = ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ [DEBUG] (f) replacement = $1.$2.$3 [DEBUG] (f) toLowerCase = false [DEBUG] (f) toUpperCase = false [DEBUG] (f) value = 2.0.3-SNAPSHOT [DEBUG] -- end configuration -- [DEBUG] define property sanitizedVersion = "2.0.3" [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=142616, ConflictMarker.markTime=120406, ConflictMarker.nodeCount=161, ConflictIdSorter.graphTime=68025, ConflictIdSorter.topsortTime=91911, ConflictIdSorter.conflictIdCount=63, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2111085, ConflictResolver.conflictItemCount=147, DefaultDependencyCollector.collectTime=76314890, DefaultDependencyCollector.transformTime=2592848} [DEBUG] org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4: [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven.scm:maven-scm-api:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4:compile [DEBUG] commons-lang:commons-lang:jar:2.6:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4:compile [DEBUG] commons-io:commons-io:jar:2.2:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4:compile [DEBUG] com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1:compile [DEBUG] net.java.dev.jna:jna:jar:3.5.2:compile [DEBUG] org.tmatesoft.svnkit:svnkit:jar:1.8.5:compile [DEBUG] com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.core:jar:0.0.7:compile [DEBUG] org.tmatesoft.sqljet:sqljet:jar:1.1.10:compile [DEBUG] org.antlr:antlr-runtime:jar:3.4:compile [DEBUG] net.java.dev.jna:platform:jar:3.5.2:compile [DEBUG] com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.pageant:jar:0.0.7:compile [DEBUG] de.regnis.q.sequence:sequence-library:jar:1.0.2:compile [DEBUG] com.trilead:trilead-ssh2:jar:1.0.0-build217:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.21:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Included: org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.apache.maven.scm:maven-scm-api:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4 [DEBUG] Included: commons-lang:commons-lang:jar:2.6 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4 [DEBUG] Included: commons-io:commons-io:jar:2.2 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4 [DEBUG] Included: com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1 [DEBUG] Included: net.java.dev.jna:jna:jar:3.5.2 [DEBUG] Included: org.tmatesoft.svnkit:svnkit:jar:1.8.5 [DEBUG] Included: com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.core:jar:0.0.7 [DEBUG] Included: org.tmatesoft.sqljet:sqljet:jar:1.1.10 [DEBUG] Included: org.antlr:antlr-runtime:jar:3.4 [DEBUG] Included: net.java.dev.jna:platform:jar:3.5.2 [DEBUG] Included: com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.pageant:jar:0.0.7 [DEBUG] Included: de.regnis.q.sequence:sequence-library:jar:1.0.2 [DEBUG] Included: com.trilead:trilead-ssh2:jar:1.0.0-build217 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.21 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Configuring mojo org.codehaus.mojo:buildnumber-maven-plugin:1.4:create from plugin realm ClassRealm[plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:buildnumber-maven-plugin:1.4:create' with basic configurator --> [DEBUG] (s) buildNumberPropertiesFileLocation = /home/hanslovskyp/git/n5/buildNumber.properties [DEBUG] (f) buildNumberPropertyName = buildNumber [DEBUG] (s) doCheck = false [DEBUG] (s) doUpdate = false [DEBUG] (f) getRevisionOnlyOnce = true [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml] [DEBUG] (s) revisionOnScmFailure = UNKNOWN [DEBUG] (f) scmBranchPropertyName = scmBranch [DEBUG] (f) scmConnectionUrl = scm:git:git://github.com/scijava/pom-scijava/n5 [DEBUG] (f) scmDeveloperConnectionUrl = scm:git:git@github.com:scijava/pom-scijava/n5 [DEBUG] (s) scmDirectory = /home/hanslovskyp/git/n5 [DEBUG] (f) scmTag = pom-scijava-19.2.0 [DEBUG] (f) session = org.apache.maven.execution.MavenSession@6daf7d37 [DEBUG] (f) settings = org.apache.maven.execution.SettingsAdapter@4fdca00a [DEBUG] (s) shortRevisionLength = 0 [DEBUG] (f) skip = false [DEBUG] (f) timestampPropertyName = timestamp [DEBUG] (f) useLastCommittedRevision = false [DEBUG] -- end configuration -- [DEBUG] Checking for local modifications: skipped. [DEBUG] Updating project files from SCM: skipped. [INFO] Executing: /bin/sh -c cd '/home/hanslovskyp/git/n5' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/hanslovskyp/git/n5 [DEBUG] consume line 2423e9af3881e07d936e2f4122d80729d0668624 [INFO] Storing buildNumber: 2423e9af3881e07d936e2f4122d80729d0668624 at timestamp: 1529442822064 [INFO] Storing buildScmBranch: master [INFO] [INFO] --- scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=53219, ConflictMarker.markTime=54616, ConflictMarker.nodeCount=60, ConflictIdSorter.graphTime=57619, ConflictIdSorter.topsortTime=40159, ConflictIdSorter.conflictIdCount=30, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=737801, ConflictResolver.conflictItemCount=56, DefaultDependencyCollector.collectTime=10179263, DefaultDependencyCollector.transformTime=977076} [DEBUG] org.scijava:scijava-maven-plugin:jar:1.0.0: [DEBUG] org.apache.maven.enforcer:enforcer-api:jar:1.3.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.11:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-dependency-tree:jar:2.2:compile [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:compile [DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3:compile [DEBUG] Created new class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Included: org.scijava:scijava-maven-plugin:jar:1.0.0 [DEBUG] Included: org.apache.maven.enforcer:enforcer-api:jar:1.3.1 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-dependency-tree:jar:2.2 [DEBUG] Included: org.eclipse.aether:aether-util:jar:0.9.0.M2 [DEBUG] Included: org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3 [DEBUG] Configuring mojo org.scijava:scijava-maven-plugin:1.0.0:set-rootdir from plugin realm ClassRealm[plugin>org.scijava:scijava-maven-plugin:1.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.scijava:scijava-maven-plugin:1.0.0:set-rootdir' with basic configurator --> [DEBUG] (f) currentProject = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml] [DEBUG] (f) rootdirPropertyName = rootdir [DEBUG] -- end configuration -- [INFO] Setting rootdir: /home/hanslovskyp/git/n5 [INFO] [INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=183612, ConflictMarker.markTime=89956, ConflictMarker.nodeCount=68, ConflictIdSorter.graphTime=74171, ConflictIdSorter.topsortTime=141429, ConflictIdSorter.conflictIdCount=28, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=807991, ConflictResolver.conflictItemCount=67, DefaultDependencyCollector.collectTime=21910672, DefaultDependencyCollector.transformTime=1347792} [DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.apache.maven.shared:maven-filtering:jar:3.1.1:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.24:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:3.1.1 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Included: org.sonatype.plexus:plexus-build-api:jar:0.0.7 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.24 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources' with basic configurator --> [DEBUG] (f) addDefaultExcludes = true [DEBUG] (f) buildFilters = [] [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) escapeWindowsPaths = true [DEBUG] (f) fileNameFiltering = false [DEBUG] (s) includeEmptyDirs = false [DEBUG] (s) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (s) overwrite = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/hanslovskyp/git/n5/src/main/resources, PatternSet [includes: {}, excludes: {}]}}] [DEBUG] (f) session = org.apache.maven.execution.MavenSession@6daf7d37 [DEBUG] (f) skip = false [DEBUG] (f) supportMultiLineFiltering = false [DEBUG] (f) useBuildFilters = true [DEBUG] (s) useDefaultDelimiters = true [DEBUG] -- end configuration -- [DEBUG] properties used {slf4j-ext.version=1.7.25, scijava-plugins-text-plain.version=0.1.3, scifio-jai-imageio.version=1.1.1, env.DIST_PACKAGES=/home/hanslovskyp/local/lib/python3.6/dist-packages, TopoJ_.version=2.0.1, scijava.jvm.test.version=1.8, jna.version=4.5.0, env.COLORFGBG=0;15, jama.version=1.0.3, imagej-ui-awt.version=0.3.1, batik-rasterizer.version=1.9.1, java.vm.specification.vendor=Oracle Corporation, IsoData_Classifier.version=2.0.1, env.LIBRARY_PATH=/home/hanslovskyp/local/lib, slf4j-jdk14.version=1.7.25, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session2, env.LSCOLORS=Gxfxcxdxbxegedabagacad, BalloonSegmentation_.version=3.0.1, scijava-search.version=0.4.0, batik-css.version=1.9.1, jpedalSTD.version=2.80b11, fiji.version=2.0.0-pre-4, weka.version=3.9.2, logback-core.version=1.2.3, commons-io.version=2.6, swing-checkbox-tree.version=1.0.2, project.baseUri=file:/home/hanslovskyp/git/n5/, CorrectBleach_.version=2.0.2, MTrack2_.version=2.0.1, license.licenseName=bsd_2, script-editor.version=0.1.5, bigwarp.version=3.0.1, imagej.version=2.0.0-rc-65, jetty-jaspi.version=9.4.4.v20170414, java.vm.specification.version=9, TrackMate.version=3.6.0, imagej-deprecated.version=0.1.2, bigdataviewer_fiji.version=4.0.2, imagej-legacy.version=0.29.0, RATS_.version=2.0.2, user.home=/home/hanslovskyp, env.ZSH_CACHE_DIR=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh/cache/, jgrapht.version=0.8.3, env.COLORTERM=yes, postgresql.version=9.1-901-1.jdbc4, env.LANGUAGE=, batik-extension.version=1.9.1, minimaven.version=2.2.1, env.PYTHONPATH=/home/hanslovskyp/local/lib/python3.6/dist-packages:/home/hanslovskyp/local/lib/python3.6/site-packages, os.version=4.16.8-1-ARCH, env.MAIL=/var/spool/mail/hanslovskyp, env.KDE_SESSION_UID=52164, jetty-monitor.version=9.4.4.v20170414, scijava-plugins-text-markdown.version=0.1.3, jetty-maven-plugin.version=9.4.4.v20170414, jetty-ant.version=9.4.4.v20170414, argLine=, TrackMate_.version=3.6.0, jetty-runner.version=9.4.4.v20170414, env._ZPLUG_PREZTO=zsh-users/prezto, jfreechart.version=1.5.0, j3dutils.version=1.6.0-scijava-2, level_sets.version=1.0.2, env.KONSOLE_PROFILE_NAME=Profile 1, commons-codec.version=1.11, scripting-java.version=0.4.1, proto.version=1.2.0, env.KONSOLE_DBUS_SERVICE=:1.31, batik-swing.version=1.9.1, Gray_Morphology.version=2.3.4, imagej-ui-swing.version=0.21.3, imglib2-ij.version=2.0.0-beta-39, mockito-core.version=2.13.0, Time_Stamper.version=2.1.0, batik-util.version=1.9.1, Calculator_Plus.version=2.0.1, Interactive_3D_Surface_Plot.version=3.0.0, Color_Inspector_3D.version=2.3.2, imglib2-algorithm.version=0.8.2, batik-anim.version=1.9.1, weka-dev.version=3.9.2, formats-bsd.version=5.7.3, IO.version=3.0.4, View5D.version=1.3.2, library.jansi.path=/opt/maven/lib/jansi-native, env.XDG_SESSION_CLASS=user, SplineDeformationGenerator_.version=2.0.2, env.PAGER=less, jpedal.version=2.80b11, LSM_Toolbox.version=4.1.2, TrakEM2_Archipelago.version=2.0.2, imagej-launcher.version=4.0.5, imagej-tensorflow.version=0.2.0, Image_5D.version=2.0.2, env.ZPLUG_FILTER=fzf-tmux:fzf:peco:percol:fzy:zaw, argLineDebug=, user.country=US, slf4j-simple.version=1.7.25, Directionality_.version=2.0.2, Sync_Win.version=1.7-fiji4, IJ_Robot.version=2.0.1, env.LOCAL=/home/hanslovskyp/local, jetty-jsp.version=9.4.4.v20170414, batik-svgpp.version=1.9.1, jetty-http-spi.version=9.4.4.v20170414, scifio-bf-compat.version=2.0.3, java.runtime.name=OpenJDK Runtime Environment, env.XDG_SESSION_ID=c2, premain-class=, imagej-plugins-commands.version=0.7.1, Kuwahara_Filter.version=2.0.1, Feature_Detection.version=2.0.2, env.MAVEN_CMD_LINE_ARGS= -X clean package, T2-NIT.version=1.1.2, pal-optimization.version=2.0.1, Siox_Segmentation.version=1.0.5, ome-common.version=5.3.4, T2-TreelineGraph.version=1.1.2, env.TERM=xterm-256color, Skeletonize3D.version=2.1.1, spim_data.version=2.2.1, scifio-lifesci.version=0.7.1, scijava.mvn.version=3.0.4, jetty-jaas.version=9.4.4.v20170414, jetty-servlets.version=9.4.4.v20170414, rootdir=/home/hanslovskyp/git/n5, env._ZPLUG_VERSION=2.4.1, Directionality.version=2.0.2, panorama.version=3.0.2, java.home=/usr/lib/jvm/java-9-openjdk, legacy-imglib1.version=1.1.8, imglib2-script.version=0.2.2, slf4j-jcl.version=1.7.25, jzlib.version=1.1.3, batik-dom.version=1.9.1, imagej-plugins-uploader-ssh.version=0.3.2, registration_3d.version=2.0.1, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env.ENHANCD_DISABLE_HYPHEN=0, M_I_P.version=2.0.1, env.PATH=/home/hanslovskyp/git/scripts:/home/hanslovskyp/local/bin:/home/hanslovskyp/local/go/bin:/home/hanslovskyp/miniconda3/bin:/home/hanslovskyp/.zplug/bin:/go/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/opt/cuda/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl, env.LESS_TERMCAP_ue=, env.XDG_SEAT=seat0, env.ALTERNATE_EDITOR=, jetty-deploy.version=9.4.4.v20170414, gson.version=2.8.2, maven.build.timestamp.format=yyyy-MM-dd'T'HH:mm:ssZ, poi.version=3.17, imagej-matlab.version=0.7.2, env._ZPLUG_AWKPATH=/home/hanslovskyp/.zplug/misc/contrib, env.LESS_TERMCAP_us=, timestamp=1529442822064, Colour_Deconvolution.version=3.0.2, scripting-renjin.version=0.2.2, jetty-io.version=9.4.4.v20170414, batik-svg-dom.version=1.9.1, java.awt.printerjob=sun.print.PSPrinterJob, Thread_Killer.version=2.0.1, org.slf4j.simpleLogger.defaultLogLevel=debug, commons-text.version=1.2, env.SESSION_MANAGER=local/saalfelds-ws2:@/tmp/.ICE-unix/1512,unix/saalfelds-ws2:/tmp/.ICE-unix/1512, commons-math3.version=3.6.1, jetty-jndi.version=9.4.4.v20170414, bUnwarpJ_.version=2.6.9, commons-lang3.version=3.7, Trainable_Segmentation.version=3.2.21, os.name=Linux, junit.version=4.12, bigdataviewer-core.version=4.3.1, scijava-maven-plugin.version=1.0.0, imglib2-ui.version=2.0.0-beta-33, Series_Labeler.version=2.0.1, maven.build.timestamp=2018-06-19T21:13:42Z, SPIM_Opener.version=2.0.2, env.ZPLUG_REPOS=/home/hanslovskyp/.zplug/repos, blockmatching_.version=2.1.2, jetty-webapp.version=9.4.4.v20170414, env.ZPLUG_LOADFILE=/home/hanslovskyp/.zplug/packages.zsh, guava.version=21.0, java3d.version=1.6.0-scijava-2, env.C_INCLUDE_PATH=/home/hanslovskyp/local/include, env.SHELL=/bin/zsh, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.GTK_MODULES=canberra-gtk-module, FlowJ.version=1.29.3, Color_Histogram.version=2.0.7, Statistical_Region_Merging.version=2.0.1, scripting-kotlin.version=0.1.0, java.vm.info=mixed mode, jai-codec.version=1.1.3, env.USER=hanslovskyp, java.class.version=53.0, FS_Align_TrakEM2.version=2.0.2, jai.version=1.1.3, TrakEM2.version=1.0i, sun.jnu.encoding=UTF-8, bigwarp_fiji.version=3.0.1, maven.build.version=Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00), maven.home=/opt/maven, gluegen-rt-main.version=2.3.2, scripting-javascript.version=0.4.4, file.separator=/, batik-gui-util.version=1.9.1, line.separator= , batik-bridge.version=1.9.1, ome-xml.version=5.6.2, env.HG=/usr/bin/hg, Colocalisation_Analysis.version=3.0.1, bigdataviewer-vistools.version=1.0.0-beta-8, scripting-scala.version=0.2.1, IO_.version=3.0.4, bio-formats_plugins.version=5.7.3, env.ENHANCD_COMMAND=cd, env.LESS_TERMCAP_mb=, Bug_Submitter.version=2.1.1, env.LESS_TERMCAP_md=, env.LESS_TERMCAP_me=, jdom2.version=2.0.6, license.organizationName=Saalfeld Lab, jogl.version=2.3.2, PIV_analyser.version=1.1.2, env._ZPLUG_URL=https://github.com/zplug/zplug, env.ZPLUG_PROTOCOL=HTTPS, env.KDE_FULL_SESSION=true, Fiji_Package_Maker.version=2.1.1, scripting-jython.version=0.4.1, jetty-jmx.version=9.4.4.v20170414, env.MOZ_PLUGIN_PATH=/usr/lib/mozilla/plugins, bij.version=0.1.1, env.PWD=/home/hanslovskyp/git/n5, file.encoding.pkg=sun.io, java.class.path=/opt/maven/boot/plexus-classworlds-2.5.2.jar, env.HOME=/home/hanslovskyp, env.LESS_TERMCAP_se=, env.LESS_TERMCAP_so=, scripting-jruby.version=0.2.5, javassist.version=3.22.0-GA, jetty-start.version=9.4.4.v20170414, logback.version=1.2.3, env.LD_LIBRARY_PATH=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages, MorphoLibJ_.version=1.3.3, env.ZPLUG_ROOT=/home/hanslovskyp/.zplug, Vaa3d_Reader.version=2.0.2, Helmholtz_Analysis.version=2.0.2, Stack_Manipulation.version=2.1.0, panorama_.version=3.0.2, scijava-jupyter-kernel.version=0.6.0, imagej-maven-plugin.version=0.7.0, env.ZPLUG_BIN=/home/hanslovskyp/.zplug/bin, tensorflow.version=1.2.0, env.ENHANCD_ROOT=/home/hanslovskyp/.zplug/repos/b4b4r07/enhancd, register_virtual_stack_slices.version=3.0.3, Fiji_Plugins.version=3.1.1, project.build.sourceEncoding=UTF-8, batik-transcoder.version=1.9.1, scifio-ome-xml.version=0.14.3, user.dir=/home/hanslovskyp/git/n5, scripting-groovy.version=0.2.6, env.XDG_CURRENT_DESKTOP=KDE, batik-ext.version=1.9.1, jetty-spring.version=9.4.4.v20170414, env.QT_AUTO_SCREEN_SCALE_FACTOR=0, java.specification.version=9, jetty-nosql.version=9.4.4.v20170414, View5D_.version=1.3.2, java.vendor.url=http://java.oracle.com/, sun.boot.library.path=/usr/lib/jvm/java-9-openjdk/lib, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher -X clean package, jdk.debug=release, maven.version=3.5.2, H5J_Loader_Plugin.version=1.0.6, Fiji_Developer.version=2.0.6, imglib2-cache.version=1.0.0-beta-7, jetty-xml.version=9.4.4.v20170414, env.CPLUS_INCLUDE_PATH=/home/hanslovskyp/local/include, java.specification.name=Java Platform API Specification, Linear_Kuwahara.version=2.0.1, scripting-clojure.version=0.1.6, env.GEOMETRY_COLOR_ROOT=red, env.PROFILEHOME=, Graph_Cut.version=1.0.2, java.runtime.version=9.0.4+11, java.io.tmpdir=/tmp, java.version=9.0.4, LSM_Reader.version=4.1.2, mockito.version=2.13.0, java.vm.specification.name=Java Virtual Machine Specification, java.library.path=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages:/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib, TrakEM2_.version=1.0i, java.vendor=Oracle Corporation, jetty-server.version=9.4.4.v20170414, env.XAUTHORITY=/tmp/xauth-52164-_0, Fiji_Archipelago.version=2.0.1, env.LANG=en_US.UTF-8, Video_Editing.version=2.0.1, Stitching.version=3.1.5, env.XDG_DATA_DIRS=/usr/share:/usr/share:/usr/local/share, user.timezone=America/New_York, Skeletonize3D_.version=2.1.1, Dichromacy_.version=2.1.1, env.ENHANCD_USE_FUZZY_MATCH=1, scijava.team.roles=founder,lead,developer,debugger,reviewer,support,maintainer, scijava-log-slf4j.version=1.0.5, Manual_Tracking.version=2.1.1, env.ANT_HOME=/usr/share/apache-ant, env.DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/52164/bus, weave_jy2java.version=2.1.0, java.vm.name=OpenJDK 64-Bit Server VM, languagesupport.version=2.6.0, batik-rasterizer-ext.version=1.9.1, os.arch=amd64, trakem2_tps.version=1.1.3, license.copyrightOwners=Stephan Saalfeld, env.DESKTOP_SESSION=/usr/share/xsessions/plasma, jetty-security.version=9.4.4.v20170414, Correct_3D_Drift.version=1.0.2, Stitching_.version=3.1.5, env.GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/hanslovskyp/.gtkrc-2.0:/home/hanslovskyp/.config/gtkrc-2.0, Archipelago_Plugins.version=0.5.4, batik-squiggle-ext.version=1.9.1, awt.toolkit=sun.awt.X11.XToolkit, jetty-proxy.version=9.4.4.v20170414, Time_Lapse.version=2.1.0, imagej-ops.version=0.39.0, sanitizedVersion=2.0.3, Anisotropic_Diffusion_2D.version=2.0.1, scijava-cache.version=0.1.2, env.JAVA_HOME=/usr/lib/jvm/java-9-openjdk/, OMEVisual.version=1.1.1, java.vm.compressedOopsMode=32-bit, scijava-java3d.version=0.1.0, imagej1.version=1.51s, imglib2-roi.version=0.4.7, QuickPALM.version=1.1.2, LocalThickness_.version=4.0.2, FlowJ_.version=1.29.3, fiji-lib.version=2.1.2, env.WINDOWID=33554438, batik-awt-util.version=1.9.1, imglib2-algorithm-fft.version=0.1.5, env.LOGNAME=hanslovskyp, batik-squiggle.version=1.9.1, env.XDG_VTNR=1, env.XCURSOR_THEME=Breeze_Snow, license.projectName=Not HDF5, rsyntaxtextarea.version=2.6.1, sun.os.patch.level=unknown, RATS.version=2.0.2, jetty-client.version=9.4.4.v20170414, Auto_Threshold.version=1.17.0, logback-classic.version=1.2.3, mines-jtk.version=20151125, env.MAVEN_OPTS= -Xmx512m, env.ZPLUG_ERROR_LOG=/home/hanslovskyp/.zplug/.error_log, scijava-io-http.version=0.1.0, main-class=, bUnwarpJ.version=2.6.9, formats-gpl.version=5.7.3, batik-i18n.version=1.9.1, imagej-usage.version=0.4.1, imglib2-algorithm-gpl.version=0.2.2, maven.conf=/opt/maven/conf, jgraphx.version=3.4.1.3, Samples.version=2.0.2, VIB_.version=3.0.2, env.ECLIPSE_HOME=/home/hanslovskyp/.eclipse, sun.java.launcher=SUN_STANDARD, bigdataviewer-server.version=2.1.0, scijava-plugins-commands.version=0.2.3, env.KONSOLE_DBUS_SESSION=/Sessions/19, env.GEOMETRY_COLOR_VIRTUALENV=green, scripting-beanshell.version=0.3.3, VIB-lib.version=2.2.0, Reconstruct_Reader.version=2.0.3, slf4j-api.version=1.7.25, imagej-scripting.version=0.7.0, jetty.version=9.4.4.v20170414, mpicbg.version=1.1.1, batik-svggen.version=1.9.1, env.SITE_PACKAGES=/home/hanslovskyp/local/lib/python3.6/site-packages, op-finder.version=0.1.3, KymographBuilder.version=2.0.0, jetty-servlet.version=9.4.4.v20170414, AnalyzeSkeleton_.version=3.2.0, jetty-annotations.version=9.4.4.v20170414, jogl-all-main.version=2.3.2, formats-api.version=5.7.3, Fiji_3D_Blob_Segmentation.version=3.0.1, scifio-cli.version=0.3.4, env.ENHANCD_DOT_SHOW_FULLPATH=0, sun.cpu.isalist=, trove4j.version=3.0.3, sun.arch.data.model=64, ij1-patcher.version=0.12.8, jython-shaded.version=2.7.0, BalloonSegmentation.version=3.0.1, env.GOPATH=/home/hanslovskyp/local/go, scijava.jvm.build.version=1.8.0-101, xmlgraphics-commons.version=2.2, java.specification.vendor=Oracle Corporation, Volume_Viewer.version=2.01.2, scijava.groupIds=org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji, Image_Expression_Parser.version=3.0.1, Vaa3d_Writer.version=1.0.2, jetty-http.version=9.4.4.v20170414, Cell_Counter.version=2.2.2, z_spacing.version=1.0.3, scifio.version=0.33.0, releaseProfiles=sonatype-oss-release, batik-codec.version=1.9.1, ome-poi.version=5.3.1, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:, file.encoding=UTF-8, Sholl_Analysis.version=3.6.13, env.SHLVL=2, env.XDG_SESSION_DESKTOP=KDE, Arrow_.version=2.0.2, multiview-reconstruction.version=0.1.12, env.ENHANCD_HOME_ARG=, trakem2-transform.version=1.0.0, classworlds.conf=/opt/maven/bin/m2.conf, imagej-plugins-tools.version=0.3.1, blockmatching.version=2.1.2, sun.io.unicode.encoding=UnicodeLittle, joda-time.version=2.9.9, enforcer.skip=true, ToAST_.version=25.0.2, imagej-notebook.version=0.2.3, TopoJ.version=2.0.1, bio-formats.version=5.7.3, multiview-simulation.version=0.1.0, buildNumber=2423e9af3881e07d936e2f4122d80729d0668624, batik-constants.version=1.9.1, Arrow.version=2.0.2, env.DISPLAY=:0, scijava-ui-awt.version=0.1.6, ImageJ_3D_Objects_Counter.version=2.0.1, env.EDITOR=emacsclient -c, SplineDeformationGenerator.version=2.0.2, batik-parser.version=1.9.1, jetty-plus.version=9.4.4.v20170414, Samples_.version=2.0.2, fiji-compat.version=2.0.3, scripting-matlab.version=0.5.2, QuickPALM_.version=1.1.2, env.ZSH=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh, j3dcore.version=1.6.0-scijava-2, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, imagej-plugins-uploader-webdav.version=0.2.2, jitk-tps.version=3.0.0, slf4j-nop.version=1.7.25, autocomplete.version=2.6.1, path.separator=:, env.ZPLUG_THREADS=16, env.ZPLUG_USE_CACHE=true, scijava-config.version=2.0.2, batik-script.version=1.9.1, imagej-common.version=0.24.9, nar-maven-plugin.version=3.5.0, miglayout.version=3.7.4, jai-core.version=1.1.3, env.ZPLUG_CACHE_DIR=/home/hanslovskyp/.zplug/cache, env.SHELL_SESSION_ID=75fcd8d4fe1f4d60b9338ed25dbf383d, maven.multiModuleProjectDirectory=/home/hanslovskyp/git/n5, batik-slideshow.version=1.9.1, CPU_Meter.version=2.0.1, package-name=org.janelia.saalfeldlab, Multi_Kymograph.version=3.0.1, env.MAVEN_PROJECTBASEDIR=/home/hanslovskyp/git/n5, scijava-common.version=2.69.0, Descriptor_based_registration.version=2.1.2, imagej-mesh.version=0.2.0, Dichromacy.version=2.1.1, env.KDE_SESSION_VERSION=5, jetty-util-ajax.version=9.4.4.v20170414, env.GTK_RC_FILES=/etc/gtk/gtkrc:/home/hanslovskyp/.gtkrc:/home/hanslovskyp/.config/gtkrc, AnalyzeSkeleton.version=3.2.0, SPIM_Registration.version=5.0.18, batik-ttf2svg.version=1.9.1, scijava-plugins-platforms.version=0.3.1, env.ENHANCD_HYPHEN_ARG=-, VIB.version=3.0.2, env.ENHANCD_DOT_ARG=.., ToAST.version=25.0.2, slf4j.version=1.7.25, itextpdf.version=5.5.12, junit-benchmarks.version=0.7.4-scijava, env.LESS=-RS#3NM~g, scijava-ui-swing.version=0.9.5, parsington.version=1.0.1, jetty-continuation.version=9.4.4.v20170414, MorphoLibJ.version=1.3.3, env.ENHANCD_DIR=/home/hanslovskyp/.enhancd, env.GEOMETRY_VIRTUALENV_CONDA_SEPARATOR=~~, jhdf5.version=14.12.6, mpicbg_.version=1.1.1, user.name=hanslovskyp, ImageJ_3D_Viewer.version=4.0.2, Volume_Calculator.version=2.0.2, batik-xml.version=1.9.1, env._ZPLUG_CONFIG_SUBSHELL=:, env.XCURSOR_SIZE=24, env.XDG_RUNTIME_DIR=/run/user/52164, project.reporting.outputEncoding=UTF-8, jetty-util.version=9.4.4.v20170414, env.FPATH=/home/hanslovskyp/.zplug/autoload:/home/hanslovskyp/.zplug/misc/completions:/home/hanslovskyp/.zplug/base/sources:/home/hanslovskyp/.zplug/base/utils:/home/hanslovskyp/.zplug/base/job:/home/hanslovskyp/.zplug/base/log:/home/hanslovskyp/.zplug/base/io:/home/hanslovskyp/.zplug/base/core:/home/hanslovskyp/.zplug/base/base:/home/hanslovskyp/.zplug/autoload/commands:/home/hanslovskyp/.zplug/autoload/options:/home/hanslovskyp/.zplug/autoload/tags:/usr/share/grml/zsh/functions:/usr/share/grml/zsh/completion:/usr/local/share/zsh/site-functions:/usr/share/zsh/site-functions:/usr/share/zsh/functions/Calendar:/usr/share/zsh/functions/Chpwd:/usr/share/zsh/functions/Completion:/usr/share/zsh/functions/Completion/Base:/usr/share/zsh/functions/Completion/Linux:/usr/share/zsh/functions/Completion/Unix:/usr/share/zsh/functions/Completion/X:/usr/share/zsh/functions/Completion/Zsh:/usr/share/zsh/functions/Exceptions:/usr/share/zsh/functions/Math:/usr/share/zsh/functions/MIME:/usr/share/zsh/functions/Misc:/usr/share/zsh/functions/Newuser:/usr/share/zsh/functions/Prompts:/usr/share/zsh/functions/TCP:/usr/share/zsh/functions/VCS_Info:/usr/share/zsh/functions/VCS_Info/Backends:/usr/share/zsh/functions/Zftp:/usr/share/zsh/functions/Zle:/home/hanslovskyp/.zplug/repos/zsh-users/zaw/functions:/home/hanslovskyp/.zplug/repos/zsh-users/zsh-completions/src, env.XDG_SESSION_TYPE=x11, jep.version=2.4.2, env.OLDPWD=/home/hanslovskyp/git/n5, batik-gvt.version=1.9.1, env.ENHANCD_DISABLE_DOT=0, Lasso_and_Blow_Tool.version=2.0.2, MTrack2.version=2.0.1, java.vm.vendor=Oracle Corporation, VectorString.version=2.0.1, env.ENHANCD_FILTER=fzy:fzf-tmux:fzf, vecmath.version=1.6.0-scijava-2, LocalThickness.version=4.0.2, jetty-rewrite.version=9.4.4.v20170414, env.GIT_REPO_DIR=/home/hanslovskyp/git, sun.cpu.endian=little, user.language=en, CorrectBleach.version=2.0.2, env._ZPLUG_OHMYZSH=robbyrussell/oh-my-zsh, joal-main.version=2.3.2, imglib2.version=4.6.1, jsch.version=0.1.54, imagej-omero.version=0.4.1, env.GEOMETRY_COLOR_CONDA=red, env.ZPLUG_HOME=/home/hanslovskyp/.zplug, jetty-jspc-maven-plugin.version=9.4.4.v20170414, env.GS_LIB=/home/hanslovskyp/.fonts, native-lib-loader.version=2.2.0, scijava.jvm.version=1.8, Simple_Neurite_Tracer.version=3.1.5, imglib2-realtransform.version=2.0.0-beta-38, batik.version=1.9.1, java.vendor.url.bug=http://bugreport.java.com/bugreport/, env.PERIOD=30, scifio-hdf5.version=0.1.2, jocl-main.version=2.3.2, opencsv.version=3.9, scmBranch=master, java.vm.version=9.0.4+11, env.ENHANCD_DISABLE_HOME=0, scijava-grab.version=0.1.0, env.QT_SELECT=4, imagej-updater.version=0.8.3} [INFO] Using 'UTF-8' encoding to copy filtered resources. [DEBUG] resource with targetPath null directory /home/hanslovskyp/git/n5/src/main/resources excludes [] includes [] [INFO] skip non existing resourceDirectory /home/hanslovskyp/git/n5/src/main/resources [DEBUG] no use filter components [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=120126, ConflictMarker.markTime=94006, ConflictMarker.nodeCount=118, ConflictIdSorter.graphTime=69562, ConflictIdSorter.topsortTime=47980, ConflictIdSorter.conflictIdCount=45, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=851153, ConflictResolver.conflictItemCount=72, DefaultDependencyCollector.collectTime=27534762, DefaultDependencyCollector.transformTime=1220403} [DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.1.0:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.apache.maven.shared:maven-shared-incremental:jar:1.1:compile [DEBUG] org.codehaus.plexus:plexus-java:jar:0.9.2:compile [DEBUG] org.ow2.asm:asm:jar:6.0_BETA:compile [DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M7:compile [DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2:runtime [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.1.0 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-incremental:jar:1.1 [DEBUG] Included: org.codehaus.plexus:plexus-java:jar:0.9.2 [DEBUG] Included: org.ow2.asm:asm:jar:6.0_BETA [DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M7 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile' with basic configurator --> [DEBUG] (f) basedir = /home/hanslovskyp/git/n5 [DEBUG] (f) buildDirectory = /home/hanslovskyp/git/n5/target [DEBUG] (f) compilePath = [/home/hanslovskyp/git/n5/target/classes, /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar, /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar, /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar, /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar, /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar, /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar, /home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar, /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar] [DEBUG] (f) compileSourceRoots = [/home/hanslovskyp/git/n5/src/main/java] [DEBUG] (f) compilerId = javac [DEBUG] (f) debug = true [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) failOnError = true [DEBUG] (f) failOnWarning = false [DEBUG] (f) forceJavacCompilerUse = false [DEBUG] (f) fork = false [DEBUG] (f) generatedSourcesDirectory = /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile {execution: default-compile} [DEBUG] (f) optimize = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) parameters = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) projectArtifact = org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] (f) session = org.apache.maven.execution.MavenSession@6daf7d37 [DEBUG] (f) showDeprecation = false [DEBUG] (f) showWarnings = false [DEBUG] (f) skipMultiThreadWarning = false [DEBUG] (f) source = 1.8 [DEBUG] (f) staleMillis = 0 [DEBUG] (f) target = 1.8 [DEBUG] (f) useIncrementalCompilation = false [DEBUG] (f) verbose = false [DEBUG] -- end configuration -- [DEBUG] Using compiler 'javac'. [DEBUG] Adding /home/hanslovskyp/git/n5/target/generated-sources/annotations to compile source roots: /home/hanslovskyp/git/n5/src/main/java [DEBUG] New compile source roots: /home/hanslovskyp/git/n5/src/main/java /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] CompilerReuseStrategy: reuseCreated [DEBUG] useIncrementalCompilation disabled [DEBUG] Classpath: [DEBUG] /home/hanslovskyp/git/n5/target/classes [DEBUG] /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar [DEBUG] Source roots: [DEBUG] /home/hanslovskyp/git/n5/src/main/java [DEBUG] /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] Command line options: [DEBUG] -d /home/hanslovskyp/git/n5/target/classes -classpath /home/hanslovskyp/git/n5/target/classes:/home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar:/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar:/home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar:/home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar:/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar:/home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar:/home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar:/home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar: -sourcepath /home/hanslovskyp/git/n5/src/main/java:/home/hanslovskyp/git/n5/target/generated-sources/annotations: -s /home/hanslovskyp/git/n5/target/generated-sources/annotations -g -nowarn -target 1.8 -source 1.8 -encoding UTF-8 [INFO] Compiling 27 source files to /home/hanslovskyp/git/n5/target/classes [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) [INFO] 1 error [INFO] ------------------------------------------------------------- [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2.807 s [INFO] Finished at: 2018-06-19T17:13:43-04:00 [INFO] Final Memory: 23M/78M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project n5: Compilation failure [ERROR] java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType [ERROR] at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) [ERROR] at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) [ERROR] at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) [ERROR] at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) [ERROR] at java.base/java.nio.file.Files.newByteChannel(Files.java:369) [ERROR] at java.base/java.nio.file.Files.newByteChannel(Files.java:415) [ERROR] at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) [ERROR] at java.base/java.nio.file.Files.newInputStream(Files.java:154) [ERROR] at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) [ERROR] at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) [ERROR] at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) [ERROR] at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) [ERROR] at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) [ERROR] at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) [ERROR] at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) [ERROR] at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) [ERROR] at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) [ERROR] at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) [ERROR] at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) [ERROR] at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) [ERROR] at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) [ERROR] at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) [ERROR] at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) [ERROR] at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) [ERROR] at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) [ERROR] at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [ERROR] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [ERROR] at java.base/java.lang.reflect.Method.invoke(Method.java:564) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) [ERROR] [ERROR] -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project n5: Compilation failure java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: org.apache.maven.plugin.compiler.CompilationFailureException: Compilation failure java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:1161) at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) [ERROR] [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException ```

hanslovsky commented 6 years ago

`JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn -X -D maven.compiler.verbose=true clean package` (1851 lines)

``` Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00) Maven home: /opt/maven Java version: 9.0.4, vendor: Oracle Corporation Java home: /usr/lib/jvm/java-9-openjdk Default locale: en_US, platform encoding: UTF-8 OS name: "linux", version: "4.16.8-1-arch", arch: "amd64", family: "unix" [DEBUG] Created new class realm maven.api [DEBUG] Importing foreign packages into class realm maven.api [DEBUG] Imported: javax.annotation.* < plexus.core [DEBUG] Imported: javax.enterprise.inject.* < plexus.core [DEBUG] Imported: javax.enterprise.util.* < plexus.core [DEBUG] Imported: javax.inject.* < plexus.core [DEBUG] Imported: org.apache.maven.* < plexus.core [DEBUG] Imported: org.apache.maven.artifact < plexus.core [DEBUG] Imported: org.apache.maven.classrealm < plexus.core [DEBUG] Imported: org.apache.maven.cli < plexus.core [DEBUG] Imported: org.apache.maven.configuration < plexus.core [DEBUG] Imported: org.apache.maven.exception < plexus.core [DEBUG] Imported: org.apache.maven.execution < plexus.core [DEBUG] Imported: org.apache.maven.execution.scope < plexus.core [DEBUG] Imported: org.apache.maven.lifecycle < plexus.core [DEBUG] Imported: org.apache.maven.model < plexus.core [DEBUG] Imported: org.apache.maven.monitor < plexus.core [DEBUG] Imported: org.apache.maven.plugin < plexus.core [DEBUG] Imported: org.apache.maven.profiles < plexus.core [DEBUG] Imported: org.apache.maven.project < plexus.core [DEBUG] Imported: org.apache.maven.reporting < plexus.core [DEBUG] Imported: org.apache.maven.repository < plexus.core [DEBUG] Imported: org.apache.maven.rtinfo < plexus.core [DEBUG] Imported: org.apache.maven.settings < plexus.core [DEBUG] Imported: org.apache.maven.toolchain < plexus.core [DEBUG] Imported: org.apache.maven.usability < plexus.core [DEBUG] Imported: org.apache.maven.wagon.* < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core [DEBUG] Imported: org.apache.maven.wagon.events < plexus.core [DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core [DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core [DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core [DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core [DEBUG] Imported: org.codehaus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.* < plexus.core [DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.component < plexus.core [DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core [DEBUG] Imported: org.codehaus.plexus.container < plexus.core [DEBUG] Imported: org.codehaus.plexus.context < plexus.core [DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core [DEBUG] Imported: org.codehaus.plexus.logging < plexus.core [DEBUG] Imported: org.codehaus.plexus.personality < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core [DEBUG] Imported: org.eclipse.aether.* < plexus.core [DEBUG] Imported: org.eclipse.aether.artifact < plexus.core [DEBUG] Imported: org.eclipse.aether.collection < plexus.core [DEBUG] Imported: org.eclipse.aether.deployment < plexus.core [DEBUG] Imported: org.eclipse.aether.graph < plexus.core [DEBUG] Imported: org.eclipse.aether.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.installation < plexus.core [DEBUG] Imported: org.eclipse.aether.internal.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.metadata < plexus.core [DEBUG] Imported: org.eclipse.aether.repository < plexus.core [DEBUG] Imported: org.eclipse.aether.resolution < plexus.core [DEBUG] Imported: org.eclipse.aether.spi < plexus.core [DEBUG] Imported: org.eclipse.aether.transfer < plexus.core [DEBUG] Imported: org.eclipse.aether.version < plexus.core [DEBUG] Imported: org.fusesource.jansi.* < plexus.core [DEBUG] Imported: org.slf4j.* < plexus.core [DEBUG] Imported: org.slf4j.helpers.* < plexus.core [DEBUG] Imported: org.slf4j.spi.* < plexus.core [DEBUG] Populating class realm maven.api [INFO] Error stacktraces are turned on. [DEBUG] Message scheme: color [DEBUG] Message styles: debug info warning error success failure strong mojo project [DEBUG] Reading global settings from /opt/maven/conf/settings.xml [DEBUG] Reading user settings from /home/hanslovskyp/.m2/settings.xml [DEBUG] Reading global toolchains from /opt/maven/conf/toolchains.xml [DEBUG] Reading user toolchains from /home/hanslovskyp/.m2/toolchains.xml [DEBUG] Using local repository at /home/hanslovskyp/.m2/repository [DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10.0 for /home/hanslovskyp/.m2/repository [INFO] Scanning for projects... [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=904932, ConflictMarker.markTime=546716, ConflictMarker.nodeCount=17, ConflictIdSorter.graphTime=646380, ConflictIdSorter.topsortTime=494894, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=4228111, ConflictResolver.conflictItemCount=16, DefaultDependencyCollector.collectTime=100989342, DefaultDependencyCollector.transformTime=9199402} [DEBUG] org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0: [DEBUG] org.apache.maven.wagon:wagon-http-shared:jar:1.0:compile [DEBUG] commons-httpclient:commons-httpclient:jar:3.1:compile [DEBUG] commons-codec:commons-codec:jar:1.2:compile [DEBUG] commons-logging:commons-logging:jar:1.1.1:compile [DEBUG] commons-io:commons-io:jar:2.0.1:compile [DEBUG] org.jsoup:jsoup:jar:1.6.1:compile [DEBUG] org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0:compile [DEBUG] org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0:compile [DEBUG] org.slf4j:slf4j-api:jar:1.5.3:compile [DEBUG] org.slf4j:slf4j-nop:jar:1.5.3:runtime [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:1.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:1.4.2:compile [DEBUG] Created new class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Importing foreign packages into class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Imported: < maven.api [DEBUG] Populating class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-http-shared:jar:1.0 [DEBUG] Included: commons-httpclient:commons-httpclient:jar:3.1 [DEBUG] Included: commons-codec:commons-codec:jar:1.2 [DEBUG] Included: commons-logging:commons-logging:jar:1.1.1 [DEBUG] Included: commons-io:commons-io:jar:2.0.1 [DEBUG] Included: org.jsoup:jsoup:jar:1.6.1 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0 [DEBUG] Included: org.slf4j:slf4j-nop:jar:1.5.3 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.4.2 [DEBUG] Extension realms for project org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Created new class realm project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Looking up lifecycle mappings for packaging jar from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava:pom:19.2.0: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava-base:pom:3.2.0: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] === REACTOR BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] Tasks: [clean, package] [DEBUG] Style: Regular [DEBUG] ======================================================================= [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building N5 2.0.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] === PROJECT BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Dependencies (collect): [test] [DEBUG] Dependencies (resolve): [compile, runtime, test] [DEBUG] Repositories (dependencies): [imagej.public (https://maven.imagej.net/content/groups/public, default, releases+snapshots), central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean (default-clean) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.clean.excludeDefaultDirectories} ${maven.clean.failOnError} ${maven.clean.followSymLinks} ${maven.clean.retryOnError} ${maven.clean.skip} ${maven.clean.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce (enforce-rules) [DEBUG] Style: Regular [DEBUG] Configuration: ${enforcer.fail} ${enforcer.failFast} ${enforcer.ignoreCache} 3.0.4 Plugins need to be versioned! 1.8.0-101 No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. true founder,lead,developer,debugger,reviewer,support,maintainer founder,lead,developer,debugger,reviewer,support,maintainer 1.8 com.headius:invokebinder com.sun:tools test name description url inceptionYear organization licenses developers contributors mailingLists scm issueManagement ciManagement properties//license.licenseName properties//license.copyrightOwners org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji ${enforcer.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 2.0.3-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources (default-resources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.resources.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.main.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:testResources (default-testResources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:testCompile (default-testCompile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.test.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 ${maven.compiler.testRelease} 1.8 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test (default-test) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.additionalClasspath} -Xms512m -Xmx512m -Dapple.awt.UIElement="true" ${childDelegation} ${maven.test.dependency.excludes} ${maven.surefire.debug} ${dependenciesToScan} ${disableXmlReport} ${enableAssertions} ${excludedGroups} ${surefire.excludesFile} ${surefire.failIfNoSpecifiedTests} ${failIfNoTests} ${forkCount} ${forkMode} ${surefire.timeout} ${groups} ${surefire.includesFile} ${junitArtifactName} ${jvm} ${objectFactory} ${parallel} ${parallelOptimized} ${surefire.parallel.forcedTimeout} ${surefire.parallel.timeout} ${perCoreThreadCount} ${plugin.artifactMap} ${surefire.printSummary} ${project.artifactMap} ${maven.test.redirectTestOutputToFile} ${surefire.reportFormat} ${surefire.reportNameSuffix} ${surefire.rerunFailingTestsCount} ${reuseForks} ${surefire.runOrder} ${surefire.shutdown} ${maven.test.skip} ${surefire.skipAfterFailureCount} ${maven.test.skip.exec} ${skipTests} ${surefire.suiteXmlFiles} ${test} ${maven.test.failure.ignore} ${testNGArtifactName} ${threadCount} ${threadCountClasses} ${threadCountMethods} ${threadCountSuites} ${trimStackTrace} ${surefire.useFile} ${surefire.useManifestOnlyJar} ${surefire.useSystemClassLoader} ${useUnlimitedThreads} ${basedir} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:jar (default-jar) [DEBUG] Style: Regular [DEBUG] Configuration: true true true org.janelia.saalfeldlab

${buildNumber}

2018-06-19T21:17:19+0000

${maven.jar.classifier} ${jar.finalName} ${jar.forceCreation} true ${jar.useDefaultManifestFile} [DEBUG] --- init fork of org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] Dependencies (collect): [test] [DEBUG] Dependencies (resolve): [] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce (enforce-rules) [DEBUG] Style: Regular [DEBUG] Configuration: ${enforcer.fail} ${enforcer.failFast} ${enforcer.ignoreCache} 3.0.4 Plugins need to be versioned! 1.8.0-101 No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. true founder,lead,developer,debugger,reviewer,support,maintainer founder,lead,developer,debugger,reviewer,support,maintainer 1.8 com.headius:invokebinder com.sun:tools test name description url inceptionYear organization licenses developers contributors mailingLists scm issueManagement ciManagement properties//license.licenseName properties//license.copyrightOwners org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji ${enforcer.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 2.0.3-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] --- exit fork of org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.source.attach} ${maven.source.classifier} ${maven.source.excludeResources} ${maven.source.forceCreation} ${maven.source.includePom} ${maven.source.skip} ${maven.source.useDefaultExcludes} ${maven.source.useDefaultManifestFile} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:test-jar (default) [DEBUG] Style: Regular [DEBUG] Configuration: true true true org.janelia.saalfeldlab

${buildNumber}

2018-06-19T21:17:19+0000

${jar.finalName} ${jar.forceCreation} ${maven.test.skip} true ${jar.useDefaultManifestFile} [DEBUG] ======================================================================= [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=203796, ConflictMarker.markTime=87092, ConflictMarker.nodeCount=27, ConflictIdSorter.graphTime=46096, ConflictIdSorter.topsortTime=34641, ConflictIdSorter.conflictIdCount=21, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2771016, ConflictResolver.conflictItemCount=26, DefaultDependencyCollector.collectTime=145384545, DefaultDependencyCollector.transformTime=3168971} [DEBUG] org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] org.tukaani:xz:jar:1.6:compile [DEBUG] org.apache.commons:commons-compress:jar:1.14:compile [DEBUG] net.jpountz.lz4:lz4:jar:1.3.0:compile [DEBUG] com.google.code.gson:gson:jar:2.8.2:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] net.imagej:ij:jar:1.51s:test (exclusions managed) [DEBUG] net.imglib2:imglib2:jar:4.6.1:test [DEBUG] net.imglib2:imglib2-ij:jar:2.0.0-beta-39:test [DEBUG] net.imagej:imagej-common:jar:0.24.9:test (version managed from 0.24.9) [DEBUG] net.imglib2:imglib2-roi:jar:0.4.7:test (version managed from 0.4.6) [DEBUG] net.sf.trove4j:trove4j:jar:3.0.3:test (version managed from 3.0.3) [DEBUG] edu.ucar:udunits:jar:4.3.18:test [DEBUG] cisd:jhdf5:jar:14.12.6:test [DEBUG] commons-lang:commons-lang:jar:2.4:test [DEBUG] commons-io:commons-io:jar:2.6:test (version managed from 1.4) [DEBUG] org.apache.commons:commons-collections4:jar:4.1:test [DEBUG] org.scijava:scijava-common:jar:2.69.0:compile [DEBUG] org.scijava:parsington:jar:1.0.1:compile (version managed from 1.0.1) [DEBUG] com.googlecode.gentyref:gentyref:jar:1.1.0:compile [DEBUG] org.bushe:eventbus:jar:1.4:compile [INFO] [INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=149879, ConflictMarker.markTime=81574, ConflictMarker.nodeCount=15, ConflictIdSorter.graphTime=49378, ConflictIdSorter.topsortTime=31009, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1074715, ConflictResolver.conflictItemCount=15, DefaultDependencyCollector.collectTime=69842371, DefaultDependencyCollector.transformTime=1422733} [DEBUG] org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Included: org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean' with basic configurator --> [DEBUG] (f) directory = /home/hanslovskyp/git/n5/target [DEBUG] (f) excludeDefaultDirectories = false [DEBUG] (f) failOnError = true [DEBUG] (f) followSymLinks = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) reportDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) retryOnError = true [DEBUG] (f) skip = false [DEBUG] (f) testOutputDirectory = /home/hanslovskyp/git/n5/target/test-classes [DEBUG] -- end configuration -- [INFO] Deleting /home/hanslovskyp/git/n5/target [INFO] Deleting directory /home/hanslovskyp/git/n5/target/classes [INFO] Deleting directory /home/hanslovskyp/git/n5/target/generated-sources/annotations [INFO] Deleting directory /home/hanslovskyp/git/n5/target/generated-sources [INFO] Deleting directory /home/hanslovskyp/git/n5/target [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/test-classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/n5/target/classes [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=1870206, ConflictMarker.markTime=506557, ConflictMarker.nodeCount=319, ConflictIdSorter.graphTime=834671, ConflictIdSorter.topsortTime=70190, ConflictIdSorter.conflictIdCount=53, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=3010920, ConflictResolver.conflictItemCount=133, DefaultDependencyCollector.collectTime=227923613, DefaultDependencyCollector.transformTime=6391928} [DEBUG] org.apache.maven.plugins:maven-enforcer-plugin:jar:1.4.1: [DEBUG] org.codehaus.mojo:extra-enforcer-rules:jar:1.0-beta-6:runtime [DEBUG] org.apache.maven:maven-model:jar:2.0.9:compile [DEBUG] org.apache.maven.shared:maven-dependency-tree:jar:2.2:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9:compile [DEBUG] org.apache.maven.shared:maven-common-artifact-filters:jar:1.4:compile [DEBUG] com.ibm.icu:icu4j:jar:56.1:runtime [DEBUG] org.scijava:scijava-maven-plugin:jar:1.0.0:runtime [DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3:provided [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.22:compile [DEBUG] commons-lang:commons-lang:jar:2.3:compile [DEBUG] org.apache.maven.enforcer:enforcer-api:jar:1.4.1:compile [DEBUG] org.apache.maven.enforcer:enforcer-rules:jar:1.4.1:compile [DEBUG] org.beanshell:bsh:jar:2.0b4:compile [DEBUG] org.codehaus.plexus:plexus-i18n:jar:1.0-beta-6:compile [DEBUG] org.apache.maven.plugin-testing:maven-plugin-testing-harness:jar:1.3:compile [DEBUG] org.codehaus.plexus:plexus-archiver:jar:2.2:compile [DEBUG] org.codehaus.plexus:plexus-io:jar:2.0.4:compile [DEBUG] junit:junit:jar:4.11:compile [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1 [DEBUG] Included: org.apache.maven.plugins:maven-enforcer-plugin:jar:1.4.1 [DEBUG] Included: org.codehaus.mojo:extra-enforcer-rules:jar:1.0-beta-6 [DEBUG] Included: org.apache.maven.shared:maven-dependency-tree:jar:2.2 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.eclipse.aether:aether-util:jar:0.9.0.M2 [DEBUG] Included: org.apache.maven.shared:maven-common-artifact-filters:jar:1.4 [DEBUG] Included: com.ibm.icu:icu4j:jar:56.1 [DEBUG] Included: org.scijava:scijava-maven-plugin:jar:1.0.0 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.22 [DEBUG] Included: commons-lang:commons-lang:jar:2.3 [DEBUG] Included: org.apache.maven.enforcer:enforcer-api:jar:1.4.1 [DEBUG] Included: org.apache.maven.enforcer:enforcer-rules:jar:1.4.1 [DEBUG] Included: org.beanshell:bsh:jar:2.0b4 [DEBUG] Included: org.codehaus.plexus:plexus-i18n:jar:1.0-beta-6 [DEBUG] Included: org.apache.maven.plugin-testing:maven-plugin-testing-harness:jar:1.3 [DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:2.2 [DEBUG] Included: org.codehaus.plexus:plexus-io:jar:2.0.4 [DEBUG] Included: junit:junit:jar:4.11 [DEBUG] Included: org.hamcrest:hamcrest-core:jar:1.3 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-enforcer-plugin:1.4.1, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce' with basic configurator --> [DEBUG] (s) fail = true [DEBUG] (s) failFast = false [DEBUG] (f) ignoreCache = false [DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-enforcer-plugin:1.4.1:enforce {execution: enforce-rules} [DEBUG] (s) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (s) version = 3.0.4 [DEBUG] (s) message = Plugins need to be versioned! [DEBUG] (s) version = 1.8.0-101 [DEBUG] (f) message = No Duplicate Classes Allowed! - For duplicate transitive dependencies, add dependency exclusions. - For duplications between direct dependencies, resolve or add ignored classes to this rule's configuration. [DEBUG] (f) findAllDuplicates = true [DEBUG] (f) validRoles = founder,lead,developer,debugger,reviewer,support,maintainer [DEBUG] (f) validRoles = founder,lead,developer,debugger,reviewer,support,maintainer [DEBUG] (f) maxJdkVersion = 1.8 [DEBUG] (f) excludes = [com.headius:invokebinder, com.sun:tools] [DEBUG] (f) ignoredScopes = [test] [DEBUG] (f) elements = [name, description, url, inceptionYear, organization, licenses, developers, contributors, mailingLists, scm, issueManagement, ciManagement, properties//license.licenseName, properties//license.copyrightOwners] [DEBUG] (f) groupIds = org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji [DEBUG] (s) rules = [org.apache.maven.plugins.enforcer.RequireMavenVersion@9fc9f91, org.apache.maven.plugins.enforcer.RequirePluginVersions@1fac1d5c, org.apache.maven.plugins.enforcer.RequireJavaVersion@108a46d6, org.apache.maven.plugins.enforcer.BanDuplicateClasses@7a8406c2, org.apache.maven.plugins.enforcer.RequireDeveloperRoles@17690e14, org.apache.maven.plugins.enforcer.RequireContributorRoles@6850b758, org.apache.maven.plugins.enforcer.EnforceBytecodeVersion@2a2ef072, org.apache.maven.plugins.enforcer.BanCircularDependencies@704641e3, org.scijava.maven.plugin.enforcer.RequireElements@2f00f851, org.scijava.maven.plugin.enforcer.RequireReproducibleBuilds@4207609e] [DEBUG] (s) session = org.apache.maven.execution.MavenSession@1f77b5cc [DEBUG] (s) skip = true [DEBUG] -- end configuration -- [INFO] Skipping Rule Enforcement. [INFO] [INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=265955, ConflictMarker.markTime=129136, ConflictMarker.nodeCount=166, ConflictIdSorter.graphTime=197581, ConflictIdSorter.topsortTime=75009, ConflictIdSorter.conflictIdCount=52, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2929765, ConflictResolver.conflictItemCount=107, DefaultDependencyCollector.collectTime=59287982, DefaultDependencyCollector.transformTime=3641237} [DEBUG] org.codehaus.mojo:build-helper-maven-plugin:jar:1.12: [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.beanshell:bsh:jar:2.0b4:compile [DEBUG] org.apache.maven.shared:file-management:jar:3.0.0:compile [DEBUG] org.apache.maven.shared:maven-shared-io:jar:3.0.0:compile [DEBUG] org.apache.maven:maven-compat:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:2.10:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Included: org.codehaus.mojo:build-helper-maven-plugin:jar:1.12 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.beanshell:bsh:jar:2.0b4 [DEBUG] Included: org.apache.maven.shared:file-management:jar:3.0.0 [DEBUG] Included: org.apache.maven.shared:maven-shared-io:jar:3.0.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property from plugin realm ClassRealm[plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property' with basic configurator --> [DEBUG] (f) failIfNoMatch = false [DEBUG] (f) name = sanitizedVersion [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) regex = ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ [DEBUG] (f) replacement = $1.$2.$3 [DEBUG] (f) toLowerCase = false [DEBUG] (f) toUpperCase = false [DEBUG] (f) value = 2.0.3-SNAPSHOT [DEBUG] -- end configuration -- [DEBUG] define property sanitizedVersion = "2.0.3" [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=272101, ConflictMarker.markTime=239765, ConflictMarker.nodeCount=161, ConflictIdSorter.graphTime=154837, ConflictIdSorter.topsortTime=151765, ConflictIdSorter.conflictIdCount=63, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=4302213, ConflictResolver.conflictItemCount=147, DefaultDependencyCollector.collectTime=85351987, DefaultDependencyCollector.transformTime=5210427} [DEBUG] org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4: [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven.scm:maven-scm-api:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4:compile [DEBUG] commons-lang:commons-lang:jar:2.6:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4:compile [DEBUG] commons-io:commons-io:jar:2.2:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4:compile [DEBUG] com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1:compile [DEBUG] net.java.dev.jna:jna:jar:3.5.2:compile [DEBUG] org.tmatesoft.svnkit:svnkit:jar:1.8.5:compile [DEBUG] com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.core:jar:0.0.7:compile [DEBUG] org.tmatesoft.sqljet:sqljet:jar:1.1.10:compile [DEBUG] org.antlr:antlr-runtime:jar:3.4:compile [DEBUG] net.java.dev.jna:platform:jar:3.5.2:compile [DEBUG] com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.pageant:jar:0.0.7:compile [DEBUG] de.regnis.q.sequence:sequence-library:jar:1.0.2:compile [DEBUG] com.trilead:trilead-ssh2:jar:1.0.0-build217:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.21:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Included: org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.apache.maven.scm:maven-scm-api:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4 [DEBUG] Included: commons-lang:commons-lang:jar:2.6 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4 [DEBUG] Included: commons-io:commons-io:jar:2.2 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4 [DEBUG] Included: com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1 [DEBUG] Included: net.java.dev.jna:jna:jar:3.5.2 [DEBUG] Included: org.tmatesoft.svnkit:svnkit:jar:1.8.5 [DEBUG] Included: com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.core:jar:0.0.7 [DEBUG] Included: org.tmatesoft.sqljet:sqljet:jar:1.1.10 [DEBUG] Included: org.antlr:antlr-runtime:jar:3.4 [DEBUG] Included: net.java.dev.jna:platform:jar:3.5.2 [DEBUG] Included: com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.pageant:jar:0.0.7 [DEBUG] Included: de.regnis.q.sequence:sequence-library:jar:1.0.2 [DEBUG] Included: com.trilead:trilead-ssh2:jar:1.0.0-build217 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.21 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Configuring mojo org.codehaus.mojo:buildnumber-maven-plugin:1.4:create from plugin realm ClassRealm[plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:buildnumber-maven-plugin:1.4:create' with basic configurator --> [DEBUG] (s) buildNumberPropertiesFileLocation = /home/hanslovskyp/git/n5/buildNumber.properties [DEBUG] (f) buildNumberPropertyName = buildNumber [DEBUG] (s) doCheck = false [DEBUG] (s) doUpdate = false [DEBUG] (f) getRevisionOnlyOnce = true [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml] [DEBUG] (s) revisionOnScmFailure = UNKNOWN [DEBUG] (f) scmBranchPropertyName = scmBranch [DEBUG] (f) scmConnectionUrl = scm:git:git://github.com/scijava/pom-scijava/n5 [DEBUG] (f) scmDeveloperConnectionUrl = scm:git:git@github.com:scijava/pom-scijava/n5 [DEBUG] (s) scmDirectory = /home/hanslovskyp/git/n5 [DEBUG] (f) scmTag = pom-scijava-19.2.0 [DEBUG] (f) session = org.apache.maven.execution.MavenSession@1f77b5cc [DEBUG] (f) settings = org.apache.maven.execution.SettingsAdapter@5634a861 [DEBUG] (s) shortRevisionLength = 0 [DEBUG] (f) skip = false [DEBUG] (f) timestampPropertyName = timestamp [DEBUG] (f) useLastCommittedRevision = false [DEBUG] -- end configuration -- [DEBUG] Checking for local modifications: skipped. [DEBUG] Updating project files from SCM: skipped. [INFO] Executing: /bin/sh -c cd '/home/hanslovskyp/git/n5' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/hanslovskyp/git/n5 [DEBUG] consume line 2423e9af3881e07d936e2f4122d80729d0668624 [INFO] Storing buildNumber: 2423e9af3881e07d936e2f4122d80729d0668624 at timestamp: 1529443040834 [INFO] Storing buildScmBranch: master [INFO] [INFO] --- scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=55734, ConflictMarker.markTime=57968, ConflictMarker.nodeCount=60, ConflictIdSorter.graphTime=33314, ConflictIdSorter.topsortTime=46724, ConflictIdSorter.conflictIdCount=30, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=770697, ConflictResolver.conflictItemCount=56, DefaultDependencyCollector.collectTime=10937677, DefaultDependencyCollector.transformTime=1008017} [DEBUG] org.scijava:scijava-maven-plugin:jar:1.0.0: [DEBUG] org.apache.maven.enforcer:enforcer-api:jar:1.3.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.11:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-dependency-tree:jar:2.2:compile [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:compile [DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3:compile [DEBUG] Created new class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Included: org.scijava:scijava-maven-plugin:jar:1.0.0 [DEBUG] Included: org.apache.maven.enforcer:enforcer-api:jar:1.3.1 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-dependency-tree:jar:2.2 [DEBUG] Included: org.eclipse.aether:aether-util:jar:0.9.0.M2 [DEBUG] Included: org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3 [DEBUG] Configuring mojo org.scijava:scijava-maven-plugin:1.0.0:set-rootdir from plugin realm ClassRealm[plugin>org.scijava:scijava-maven-plugin:1.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.scijava:scijava-maven-plugin:1.0.0:set-rootdir' with basic configurator --> [DEBUG] (f) currentProject = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml] [DEBUG] (f) rootdirPropertyName = rootdir [DEBUG] -- end configuration -- [INFO] Setting rootdir: /home/hanslovskyp/git/n5 [INFO] [INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=104133, ConflictMarker.markTime=91771, ConflictMarker.nodeCount=68, ConflictIdSorter.graphTime=63277, ConflictIdSorter.topsortTime=61320, ConflictIdSorter.conflictIdCount=28, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=697852, ConflictResolver.conflictItemCount=67, DefaultDependencyCollector.collectTime=22056592, DefaultDependencyCollector.transformTime=1064519} [DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.apache.maven.shared:maven-filtering:jar:3.1.1:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.24:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:3.1.1 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Included: org.sonatype.plexus:plexus-build-api:jar:0.0.7 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.24 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources' with basic configurator --> [DEBUG] (f) addDefaultExcludes = true [DEBUG] (f) buildFilters = [] [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) escapeWindowsPaths = true [DEBUG] (f) fileNameFiltering = false [DEBUG] (s) includeEmptyDirs = false [DEBUG] (s) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (s) overwrite = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/hanslovskyp/git/n5/src/main/resources, PatternSet [includes: {}, excludes: {}]}}] [DEBUG] (f) session = org.apache.maven.execution.MavenSession@1f77b5cc [DEBUG] (f) skip = false [DEBUG] (f) supportMultiLineFiltering = false [DEBUG] (f) useBuildFilters = true [DEBUG] (s) useDefaultDelimiters = true [DEBUG] -- end configuration -- [DEBUG] properties used {slf4j-ext.version=1.7.25, scijava-plugins-text-plain.version=0.1.3, scifio-jai-imageio.version=1.1.1, env.DIST_PACKAGES=/home/hanslovskyp/local/lib/python3.6/dist-packages, TopoJ_.version=2.0.1, scijava.jvm.test.version=1.8, jna.version=4.5.0, env.COLORFGBG=0;15, jama.version=1.0.3, imagej-ui-awt.version=0.3.1, batik-rasterizer.version=1.9.1, java.vm.specification.vendor=Oracle Corporation, IsoData_Classifier.version=2.0.1, env.LIBRARY_PATH=/home/hanslovskyp/local/lib, slf4j-jdk14.version=1.7.25, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session2, env.LSCOLORS=Gxfxcxdxbxegedabagacad, BalloonSegmentation_.version=3.0.1, scijava-search.version=0.4.0, batik-css.version=1.9.1, jpedalSTD.version=2.80b11, fiji.version=2.0.0-pre-4, weka.version=3.9.2, logback-core.version=1.2.3, commons-io.version=2.6, swing-checkbox-tree.version=1.0.2, project.baseUri=file:/home/hanslovskyp/git/n5/, CorrectBleach_.version=2.0.2, MTrack2_.version=2.0.1, license.licenseName=bsd_2, script-editor.version=0.1.5, bigwarp.version=3.0.1, imagej.version=2.0.0-rc-65, jetty-jaspi.version=9.4.4.v20170414, java.vm.specification.version=9, TrackMate.version=3.6.0, imagej-deprecated.version=0.1.2, bigdataviewer_fiji.version=4.0.2, imagej-legacy.version=0.29.0, RATS_.version=2.0.2, user.home=/home/hanslovskyp, env.ZSH_CACHE_DIR=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh/cache/, jgrapht.version=0.8.3, env.COLORTERM=yes, postgresql.version=9.1-901-1.jdbc4, env.LANGUAGE=, batik-extension.version=1.9.1, minimaven.version=2.2.1, env.PYTHONPATH=/home/hanslovskyp/local/lib/python3.6/dist-packages:/home/hanslovskyp/local/lib/python3.6/site-packages, os.version=4.16.8-1-ARCH, env.MAIL=/var/spool/mail/hanslovskyp, env.KDE_SESSION_UID=52164, jetty-monitor.version=9.4.4.v20170414, scijava-plugins-text-markdown.version=0.1.3, jetty-maven-plugin.version=9.4.4.v20170414, jetty-ant.version=9.4.4.v20170414, argLine=, TrackMate_.version=3.6.0, jetty-runner.version=9.4.4.v20170414, env._ZPLUG_PREZTO=zsh-users/prezto, jfreechart.version=1.5.0, j3dutils.version=1.6.0-scijava-2, level_sets.version=1.0.2, env.KONSOLE_PROFILE_NAME=Profile 1, commons-codec.version=1.11, scripting-java.version=0.4.1, proto.version=1.2.0, env.KONSOLE_DBUS_SERVICE=:1.31, batik-swing.version=1.9.1, Gray_Morphology.version=2.3.4, imagej-ui-swing.version=0.21.3, imglib2-ij.version=2.0.0-beta-39, mockito-core.version=2.13.0, Time_Stamper.version=2.1.0, batik-util.version=1.9.1, Calculator_Plus.version=2.0.1, Interactive_3D_Surface_Plot.version=3.0.0, Color_Inspector_3D.version=2.3.2, imglib2-algorithm.version=0.8.2, batik-anim.version=1.9.1, maven.compiler.verbose=true, weka-dev.version=3.9.2, formats-bsd.version=5.7.3, IO.version=3.0.4, View5D.version=1.3.2, library.jansi.path=/opt/maven/lib/jansi-native, env.XDG_SESSION_CLASS=user, SplineDeformationGenerator_.version=2.0.2, env.PAGER=less, jpedal.version=2.80b11, LSM_Toolbox.version=4.1.2, TrakEM2_Archipelago.version=2.0.2, imagej-launcher.version=4.0.5, imagej-tensorflow.version=0.2.0, Image_5D.version=2.0.2, env.ZPLUG_FILTER=fzf-tmux:fzf:peco:percol:fzy:zaw, argLineDebug=, user.country=US, slf4j-simple.version=1.7.25, Directionality_.version=2.0.2, Sync_Win.version=1.7-fiji4, IJ_Robot.version=2.0.1, env.LOCAL=/home/hanslovskyp/local, jetty-jsp.version=9.4.4.v20170414, batik-svgpp.version=1.9.1, jetty-http-spi.version=9.4.4.v20170414, scifio-bf-compat.version=2.0.3, java.runtime.name=OpenJDK Runtime Environment, env.XDG_SESSION_ID=c2, premain-class=, imagej-plugins-commands.version=0.7.1, Kuwahara_Filter.version=2.0.1, Feature_Detection.version=2.0.2, env.MAVEN_CMD_LINE_ARGS= -X -D maven.compiler.verbose=true clean package, T2-NIT.version=1.1.2, pal-optimization.version=2.0.1, Siox_Segmentation.version=1.0.5, ome-common.version=5.3.4, T2-TreelineGraph.version=1.1.2, env.TERM=xterm-256color, Skeletonize3D.version=2.1.1, spim_data.version=2.2.1, scifio-lifesci.version=0.7.1, scijava.mvn.version=3.0.4, jetty-jaas.version=9.4.4.v20170414, jetty-servlets.version=9.4.4.v20170414, rootdir=/home/hanslovskyp/git/n5, env._ZPLUG_VERSION=2.4.1, Directionality.version=2.0.2, panorama.version=3.0.2, java.home=/usr/lib/jvm/java-9-openjdk, legacy-imglib1.version=1.1.8, imglib2-script.version=0.2.2, slf4j-jcl.version=1.7.25, jzlib.version=1.1.3, batik-dom.version=1.9.1, imagej-plugins-uploader-ssh.version=0.3.2, registration_3d.version=2.0.1, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env.ENHANCD_DISABLE_HYPHEN=0, M_I_P.version=2.0.1, env.PATH=/home/hanslovskyp/git/scripts:/home/hanslovskyp/local/bin:/home/hanslovskyp/local/go/bin:/home/hanslovskyp/miniconda3/bin:/home/hanslovskyp/.zplug/bin:/go/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/opt/cuda/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl, env.LESS_TERMCAP_ue=, env.XDG_SEAT=seat0, env.ALTERNATE_EDITOR=, jetty-deploy.version=9.4.4.v20170414, gson.version=2.8.2, maven.build.timestamp.format=yyyy-MM-dd'T'HH:mm:ssZ, poi.version=3.17, imagej-matlab.version=0.7.2, env._ZPLUG_AWKPATH=/home/hanslovskyp/.zplug/misc/contrib, env.LESS_TERMCAP_us=, timestamp=1529443040834, Colour_Deconvolution.version=3.0.2, scripting-renjin.version=0.2.2, jetty-io.version=9.4.4.v20170414, batik-svg-dom.version=1.9.1, java.awt.printerjob=sun.print.PSPrinterJob, Thread_Killer.version=2.0.1, org.slf4j.simpleLogger.defaultLogLevel=debug, commons-text.version=1.2, env.SESSION_MANAGER=local/saalfelds-ws2:@/tmp/.ICE-unix/1512,unix/saalfelds-ws2:/tmp/.ICE-unix/1512, commons-math3.version=3.6.1, jetty-jndi.version=9.4.4.v20170414, bUnwarpJ_.version=2.6.9, commons-lang3.version=3.7, Trainable_Segmentation.version=3.2.21, os.name=Linux, junit.version=4.12, bigdataviewer-core.version=4.3.1, scijava-maven-plugin.version=1.0.0, imglib2-ui.version=2.0.0-beta-33, Series_Labeler.version=2.0.1, maven.build.timestamp=2018-06-19T21:17:21Z, SPIM_Opener.version=2.0.2, env.ZPLUG_REPOS=/home/hanslovskyp/.zplug/repos, blockmatching_.version=2.1.2, jetty-webapp.version=9.4.4.v20170414, env.ZPLUG_LOADFILE=/home/hanslovskyp/.zplug/packages.zsh, guava.version=21.0, java3d.version=1.6.0-scijava-2, env.C_INCLUDE_PATH=/home/hanslovskyp/local/include, env.SHELL=/bin/zsh, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.GTK_MODULES=canberra-gtk-module, FlowJ.version=1.29.3, Color_Histogram.version=2.0.7, Statistical_Region_Merging.version=2.0.1, scripting-kotlin.version=0.1.0, java.vm.info=mixed mode, jai-codec.version=1.1.3, env.USER=hanslovskyp, java.class.version=53.0, FS_Align_TrakEM2.version=2.0.2, jai.version=1.1.3, TrakEM2.version=1.0i, sun.jnu.encoding=UTF-8, bigwarp_fiji.version=3.0.1, maven.build.version=Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00), maven.home=/opt/maven, gluegen-rt-main.version=2.3.2, scripting-javascript.version=0.4.4, file.separator=/, batik-gui-util.version=1.9.1, line.separator= , batik-bridge.version=1.9.1, ome-xml.version=5.6.2, env.HG=/usr/bin/hg, Colocalisation_Analysis.version=3.0.1, bigdataviewer-vistools.version=1.0.0-beta-8, scripting-scala.version=0.2.1, IO_.version=3.0.4, bio-formats_plugins.version=5.7.3, env.ENHANCD_COMMAND=cd, env.LESS_TERMCAP_mb=, Bug_Submitter.version=2.1.1, env.LESS_TERMCAP_md=, env.LESS_TERMCAP_me=, jdom2.version=2.0.6, license.organizationName=Saalfeld Lab, jogl.version=2.3.2, PIV_analyser.version=1.1.2, env._ZPLUG_URL=https://github.com/zplug/zplug, env.ZPLUG_PROTOCOL=HTTPS, env.KDE_FULL_SESSION=true, Fiji_Package_Maker.version=2.1.1, scripting-jython.version=0.4.1, jetty-jmx.version=9.4.4.v20170414, env.MOZ_PLUGIN_PATH=/usr/lib/mozilla/plugins, bij.version=0.1.1, env.PWD=/home/hanslovskyp/git/n5, file.encoding.pkg=sun.io, java.class.path=/opt/maven/boot/plexus-classworlds-2.5.2.jar, env.HOME=/home/hanslovskyp, env.LESS_TERMCAP_se=, env.LESS_TERMCAP_so=, scripting-jruby.version=0.2.5, javassist.version=3.22.0-GA, jetty-start.version=9.4.4.v20170414, logback.version=1.2.3, env.LD_LIBRARY_PATH=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages, MorphoLibJ_.version=1.3.3, env.ZPLUG_ROOT=/home/hanslovskyp/.zplug, Vaa3d_Reader.version=2.0.2, Helmholtz_Analysis.version=2.0.2, Stack_Manipulation.version=2.1.0, panorama_.version=3.0.2, scijava-jupyter-kernel.version=0.6.0, imagej-maven-plugin.version=0.7.0, env.ZPLUG_BIN=/home/hanslovskyp/.zplug/bin, tensorflow.version=1.2.0, env.ENHANCD_ROOT=/home/hanslovskyp/.zplug/repos/b4b4r07/enhancd, register_virtual_stack_slices.version=3.0.3, Fiji_Plugins.version=3.1.1, project.build.sourceEncoding=UTF-8, batik-transcoder.version=1.9.1, scifio-ome-xml.version=0.14.3, user.dir=/home/hanslovskyp/git/n5, scripting-groovy.version=0.2.6, env.XDG_CURRENT_DESKTOP=KDE, batik-ext.version=1.9.1, jetty-spring.version=9.4.4.v20170414, env.QT_AUTO_SCREEN_SCALE_FACTOR=0, java.specification.version=9, jetty-nosql.version=9.4.4.v20170414, View5D_.version=1.3.2, java.vendor.url=http://java.oracle.com/, sun.boot.library.path=/usr/lib/jvm/java-9-openjdk/lib, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher -X -D maven.compiler.verbose=true clean package, jdk.debug=release, maven.version=3.5.2, H5J_Loader_Plugin.version=1.0.6, Fiji_Developer.version=2.0.6, imglib2-cache.version=1.0.0-beta-7, jetty-xml.version=9.4.4.v20170414, env.CPLUS_INCLUDE_PATH=/home/hanslovskyp/local/include, java.specification.name=Java Platform API Specification, Linear_Kuwahara.version=2.0.1, scripting-clojure.version=0.1.6, env.GEOMETRY_COLOR_ROOT=red, env.PROFILEHOME=, Graph_Cut.version=1.0.2, java.runtime.version=9.0.4+11, java.io.tmpdir=/tmp, java.version=9.0.4, LSM_Reader.version=4.1.2, mockito.version=2.13.0, java.vm.specification.name=Java Virtual Machine Specification, java.library.path=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages:/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib, TrakEM2_.version=1.0i, java.vendor=Oracle Corporation, jetty-server.version=9.4.4.v20170414, env.XAUTHORITY=/tmp/xauth-52164-_0, Fiji_Archipelago.version=2.0.1, env.LANG=en_US.UTF-8, Video_Editing.version=2.0.1, Stitching.version=3.1.5, env.XDG_DATA_DIRS=/usr/share:/usr/share:/usr/local/share, user.timezone=America/New_York, Skeletonize3D_.version=2.1.1, Dichromacy_.version=2.1.1, env.ENHANCD_USE_FUZZY_MATCH=1, scijava.team.roles=founder,lead,developer,debugger,reviewer,support,maintainer, scijava-log-slf4j.version=1.0.5, Manual_Tracking.version=2.1.1, env.ANT_HOME=/usr/share/apache-ant, env.DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/52164/bus, weave_jy2java.version=2.1.0, java.vm.name=OpenJDK 64-Bit Server VM, languagesupport.version=2.6.0, batik-rasterizer-ext.version=1.9.1, os.arch=amd64, trakem2_tps.version=1.1.3, license.copyrightOwners=Stephan Saalfeld, env.DESKTOP_SESSION=/usr/share/xsessions/plasma, jetty-security.version=9.4.4.v20170414, Correct_3D_Drift.version=1.0.2, Stitching_.version=3.1.5, env.GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/hanslovskyp/.gtkrc-2.0:/home/hanslovskyp/.config/gtkrc-2.0, Archipelago_Plugins.version=0.5.4, batik-squiggle-ext.version=1.9.1, awt.toolkit=sun.awt.X11.XToolkit, jetty-proxy.version=9.4.4.v20170414, Time_Lapse.version=2.1.0, imagej-ops.version=0.39.0, sanitizedVersion=2.0.3, Anisotropic_Diffusion_2D.version=2.0.1, scijava-cache.version=0.1.2, env.JAVA_HOME=/usr/lib/jvm/java-9-openjdk/, OMEVisual.version=1.1.1, java.vm.compressedOopsMode=32-bit, scijava-java3d.version=0.1.0, imagej1.version=1.51s, imglib2-roi.version=0.4.7, QuickPALM.version=1.1.2, LocalThickness_.version=4.0.2, FlowJ_.version=1.29.3, fiji-lib.version=2.1.2, env.WINDOWID=33554438, batik-awt-util.version=1.9.1, imglib2-algorithm-fft.version=0.1.5, env.LOGNAME=hanslovskyp, batik-squiggle.version=1.9.1, env.XDG_VTNR=1, env.XCURSOR_THEME=Breeze_Snow, license.projectName=Not HDF5, rsyntaxtextarea.version=2.6.1, sun.os.patch.level=unknown, RATS.version=2.0.2, jetty-client.version=9.4.4.v20170414, Auto_Threshold.version=1.17.0, logback-classic.version=1.2.3, mines-jtk.version=20151125, env.MAVEN_OPTS= -Xmx512m, env.ZPLUG_ERROR_LOG=/home/hanslovskyp/.zplug/.error_log, scijava-io-http.version=0.1.0, main-class=, bUnwarpJ.version=2.6.9, formats-gpl.version=5.7.3, batik-i18n.version=1.9.1, imagej-usage.version=0.4.1, imglib2-algorithm-gpl.version=0.2.2, maven.conf=/opt/maven/conf, jgraphx.version=3.4.1.3, Samples.version=2.0.2, VIB_.version=3.0.2, env.ECLIPSE_HOME=/home/hanslovskyp/.eclipse, sun.java.launcher=SUN_STANDARD, bigdataviewer-server.version=2.1.0, scijava-plugins-commands.version=0.2.3, env.KONSOLE_DBUS_SESSION=/Sessions/19, env.GEOMETRY_COLOR_VIRTUALENV=green, scripting-beanshell.version=0.3.3, VIB-lib.version=2.2.0, Reconstruct_Reader.version=2.0.3, slf4j-api.version=1.7.25, imagej-scripting.version=0.7.0, jetty.version=9.4.4.v20170414, mpicbg.version=1.1.1, batik-svggen.version=1.9.1, env.SITE_PACKAGES=/home/hanslovskyp/local/lib/python3.6/site-packages, op-finder.version=0.1.3, KymographBuilder.version=2.0.0, jetty-servlet.version=9.4.4.v20170414, AnalyzeSkeleton_.version=3.2.0, jetty-annotations.version=9.4.4.v20170414, jogl-all-main.version=2.3.2, formats-api.version=5.7.3, Fiji_3D_Blob_Segmentation.version=3.0.1, scifio-cli.version=0.3.4, env.ENHANCD_DOT_SHOW_FULLPATH=0, sun.cpu.isalist=, trove4j.version=3.0.3, sun.arch.data.model=64, ij1-patcher.version=0.12.8, jython-shaded.version=2.7.0, BalloonSegmentation.version=3.0.1, env.GOPATH=/home/hanslovskyp/local/go, scijava.jvm.build.version=1.8.0-101, xmlgraphics-commons.version=2.2, java.specification.vendor=Oracle Corporation, Volume_Viewer.version=2.01.2, scijava.groupIds=org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji, Image_Expression_Parser.version=3.0.1, Vaa3d_Writer.version=1.0.2, jetty-http.version=9.4.4.v20170414, Cell_Counter.version=2.2.2, z_spacing.version=1.0.3, scifio.version=0.33.0, releaseProfiles=sonatype-oss-release, batik-codec.version=1.9.1, ome-poi.version=5.3.1, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:, file.encoding=UTF-8, Sholl_Analysis.version=3.6.13, env.SHLVL=2, env.XDG_SESSION_DESKTOP=KDE, Arrow_.version=2.0.2, multiview-reconstruction.version=0.1.12, env.ENHANCD_HOME_ARG=, trakem2-transform.version=1.0.0, classworlds.conf=/opt/maven/bin/m2.conf, imagej-plugins-tools.version=0.3.1, blockmatching.version=2.1.2, sun.io.unicode.encoding=UnicodeLittle, joda-time.version=2.9.9, enforcer.skip=true, ToAST_.version=25.0.2, imagej-notebook.version=0.2.3, TopoJ.version=2.0.1, bio-formats.version=5.7.3, multiview-simulation.version=0.1.0, buildNumber=2423e9af3881e07d936e2f4122d80729d0668624, batik-constants.version=1.9.1, Arrow.version=2.0.2, env.DISPLAY=:0, scijava-ui-awt.version=0.1.6, ImageJ_3D_Objects_Counter.version=2.0.1, env.EDITOR=emacsclient -c, SplineDeformationGenerator.version=2.0.2, batik-parser.version=1.9.1, jetty-plus.version=9.4.4.v20170414, Samples_.version=2.0.2, fiji-compat.version=2.0.3, scripting-matlab.version=0.5.2, QuickPALM_.version=1.1.2, env.ZSH=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh, j3dcore.version=1.6.0-scijava-2, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, imagej-plugins-uploader-webdav.version=0.2.2, jitk-tps.version=3.0.0, slf4j-nop.version=1.7.25, autocomplete.version=2.6.1, path.separator=:, env.ZPLUG_THREADS=16, env.ZPLUG_USE_CACHE=true, scijava-config.version=2.0.2, batik-script.version=1.9.1, imagej-common.version=0.24.9, nar-maven-plugin.version=3.5.0, miglayout.version=3.7.4, jai-core.version=1.1.3, env.ZPLUG_CACHE_DIR=/home/hanslovskyp/.zplug/cache, env.SHELL_SESSION_ID=75fcd8d4fe1f4d60b9338ed25dbf383d, maven.multiModuleProjectDirectory=/home/hanslovskyp/git/n5, batik-slideshow.version=1.9.1, CPU_Meter.version=2.0.1, package-name=org.janelia.saalfeldlab, Multi_Kymograph.version=3.0.1, env.MAVEN_PROJECTBASEDIR=/home/hanslovskyp/git/n5, scijava-common.version=2.69.0, Descriptor_based_registration.version=2.1.2, imagej-mesh.version=0.2.0, Dichromacy.version=2.1.1, env.KDE_SESSION_VERSION=5, jetty-util-ajax.version=9.4.4.v20170414, env.GTK_RC_FILES=/etc/gtk/gtkrc:/home/hanslovskyp/.gtkrc:/home/hanslovskyp/.config/gtkrc, AnalyzeSkeleton.version=3.2.0, SPIM_Registration.version=5.0.18, batik-ttf2svg.version=1.9.1, scijava-plugins-platforms.version=0.3.1, env.ENHANCD_HYPHEN_ARG=-, VIB.version=3.0.2, env.ENHANCD_DOT_ARG=.., ToAST.version=25.0.2, slf4j.version=1.7.25, itextpdf.version=5.5.12, junit-benchmarks.version=0.7.4-scijava, env.LESS=-RS#3NM~g, scijava-ui-swing.version=0.9.5, parsington.version=1.0.1, jetty-continuation.version=9.4.4.v20170414, MorphoLibJ.version=1.3.3, env.ENHANCD_DIR=/home/hanslovskyp/.enhancd, env.GEOMETRY_VIRTUALENV_CONDA_SEPARATOR=~~, jhdf5.version=14.12.6, mpicbg_.version=1.1.1, user.name=hanslovskyp, ImageJ_3D_Viewer.version=4.0.2, Volume_Calculator.version=2.0.2, batik-xml.version=1.9.1, env._ZPLUG_CONFIG_SUBSHELL=:, env.XCURSOR_SIZE=24, env.XDG_RUNTIME_DIR=/run/user/52164, project.reporting.outputEncoding=UTF-8, jetty-util.version=9.4.4.v20170414, env.FPATH=/home/hanslovskyp/.zplug/autoload:/home/hanslovskyp/.zplug/misc/completions:/home/hanslovskyp/.zplug/base/sources:/home/hanslovskyp/.zplug/base/utils:/home/hanslovskyp/.zplug/base/job:/home/hanslovskyp/.zplug/base/log:/home/hanslovskyp/.zplug/base/io:/home/hanslovskyp/.zplug/base/core:/home/hanslovskyp/.zplug/base/base:/home/hanslovskyp/.zplug/autoload/commands:/home/hanslovskyp/.zplug/autoload/options:/home/hanslovskyp/.zplug/autoload/tags:/usr/share/grml/zsh/functions:/usr/share/grml/zsh/completion:/usr/local/share/zsh/site-functions:/usr/share/zsh/site-functions:/usr/share/zsh/functions/Calendar:/usr/share/zsh/functions/Chpwd:/usr/share/zsh/functions/Completion:/usr/share/zsh/functions/Completion/Base:/usr/share/zsh/functions/Completion/Linux:/usr/share/zsh/functions/Completion/Unix:/usr/share/zsh/functions/Completion/X:/usr/share/zsh/functions/Completion/Zsh:/usr/share/zsh/functions/Exceptions:/usr/share/zsh/functions/Math:/usr/share/zsh/functions/MIME:/usr/share/zsh/functions/Misc:/usr/share/zsh/functions/Newuser:/usr/share/zsh/functions/Prompts:/usr/share/zsh/functions/TCP:/usr/share/zsh/functions/VCS_Info:/usr/share/zsh/functions/VCS_Info/Backends:/usr/share/zsh/functions/Zftp:/usr/share/zsh/functions/Zle:/home/hanslovskyp/.zplug/repos/zsh-users/zaw/functions:/home/hanslovskyp/.zplug/repos/zsh-users/zsh-completions/src, env.XDG_SESSION_TYPE=x11, jep.version=2.4.2, env.OLDPWD=/home/hanslovskyp/git/n5, batik-gvt.version=1.9.1, env.ENHANCD_DISABLE_DOT=0, Lasso_and_Blow_Tool.version=2.0.2, MTrack2.version=2.0.1, java.vm.vendor=Oracle Corporation, VectorString.version=2.0.1, env.ENHANCD_FILTER=fzy:fzf-tmux:fzf, vecmath.version=1.6.0-scijava-2, LocalThickness.version=4.0.2, jetty-rewrite.version=9.4.4.v20170414, env.GIT_REPO_DIR=/home/hanslovskyp/git, sun.cpu.endian=little, user.language=en, CorrectBleach.version=2.0.2, env._ZPLUG_OHMYZSH=robbyrussell/oh-my-zsh, joal-main.version=2.3.2, imglib2.version=4.6.1, jsch.version=0.1.54, imagej-omero.version=0.4.1, env.GEOMETRY_COLOR_CONDA=red, env.ZPLUG_HOME=/home/hanslovskyp/.zplug, jetty-jspc-maven-plugin.version=9.4.4.v20170414, env.GS_LIB=/home/hanslovskyp/.fonts, native-lib-loader.version=2.2.0, scijava.jvm.version=1.8, Simple_Neurite_Tracer.version=3.1.5, imglib2-realtransform.version=2.0.0-beta-38, batik.version=1.9.1, java.vendor.url.bug=http://bugreport.java.com/bugreport/, env.PERIOD=30, scifio-hdf5.version=0.1.2, jocl-main.version=2.3.2, opencsv.version=3.9, scmBranch=master, java.vm.version=9.0.4+11, env.ENHANCD_DISABLE_HOME=0, scijava-grab.version=0.1.0, env.QT_SELECT=4, imagej-updater.version=0.8.3} [INFO] Using 'UTF-8' encoding to copy filtered resources. [DEBUG] resource with targetPath null directory /home/hanslovskyp/git/n5/src/main/resources excludes [] includes [] [INFO] skip non existing resourceDirectory /home/hanslovskyp/git/n5/src/main/resources [DEBUG] no use filter components [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ n5 --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=121663, ConflictMarker.markTime=95822, ConflictMarker.nodeCount=118, ConflictIdSorter.graphTime=63136, ConflictIdSorter.topsortTime=50635, ConflictIdSorter.conflictIdCount=45, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=850805, ConflictResolver.conflictItemCount=72, DefaultDependencyCollector.collectTime=24437476, DefaultDependencyCollector.transformTime=1212651} [DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.1.0:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.apache.maven.shared:maven-shared-incremental:jar:1.1:compile [DEBUG] org.codehaus.plexus:plexus-java:jar:0.9.2:compile [DEBUG] org.ow2.asm:asm:jar:6.0_BETA:compile [DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M7:compile [DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2:runtime [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.1.0 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-incremental:jar:1.1 [DEBUG] Included: org.codehaus.plexus:plexus-java:jar:0.9.2 [DEBUG] Included: org.ow2.asm:asm:jar:6.0_BETA [DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M7 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile' with basic configurator --> [DEBUG] (f) basedir = /home/hanslovskyp/git/n5 [DEBUG] (f) buildDirectory = /home/hanslovskyp/git/n5/target [DEBUG] (f) compilePath = [/home/hanslovskyp/git/n5/target/classes, /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar, /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar, /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar, /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar, /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar, /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar, /home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar, /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar] [DEBUG] (f) compileSourceRoots = [/home/hanslovskyp/git/n5/src/main/java] [DEBUG] (f) compilerId = javac [DEBUG] (f) debug = true [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) failOnError = true [DEBUG] (f) failOnWarning = false [DEBUG] (f) forceJavacCompilerUse = false [DEBUG] (f) fork = false [DEBUG] (f) generatedSourcesDirectory = /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile {execution: default-compile} [DEBUG] (f) optimize = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/n5/target/classes [DEBUG] (f) parameters = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT @ /home/hanslovskyp/git/n5/pom.xml [DEBUG] (f) projectArtifact = org.janelia.saalfeldlab:n5:jar:2.0.3-SNAPSHOT [DEBUG] (f) session = org.apache.maven.execution.MavenSession@1f77b5cc [DEBUG] (f) showDeprecation = false [DEBUG] (f) showWarnings = false [DEBUG] (f) skipMultiThreadWarning = false [DEBUG] (f) source = 1.8 [DEBUG] (f) staleMillis = 0 [DEBUG] (f) target = 1.8 [DEBUG] (f) useIncrementalCompilation = false [DEBUG] (f) verbose = true [DEBUG] -- end configuration -- [DEBUG] Using compiler 'javac'. [DEBUG] Adding /home/hanslovskyp/git/n5/target/generated-sources/annotations to compile source roots: /home/hanslovskyp/git/n5/src/main/java [DEBUG] New compile source roots: /home/hanslovskyp/git/n5/src/main/java /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] CompilerReuseStrategy: reuseCreated [DEBUG] useIncrementalCompilation disabled [DEBUG] Classpath: [DEBUG] /home/hanslovskyp/git/n5/target/classes [DEBUG] /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar [DEBUG] Source roots: [DEBUG] /home/hanslovskyp/git/n5/src/main/java [DEBUG] /home/hanslovskyp/git/n5/target/generated-sources/annotations [DEBUG] Command line options: [DEBUG] -d /home/hanslovskyp/git/n5/target/classes -classpath /home/hanslovskyp/git/n5/target/classes:/home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar:/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar:/home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar:/home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar:/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar:/home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar:/home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar:/home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar: -sourcepath /home/hanslovskyp/git/n5/src/main/java:/home/hanslovskyp/git/n5/target/generated-sources/annotations: -s /home/hanslovskyp/git/n5/target/generated-sources/annotations -g -verbose -nowarn -target 1.8 -source 1.8 -encoding UTF-8 [INFO] Compiling 27 source files to /home/hanslovskyp/git/n5/target/classes [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/IntArrayDataBlock.java]] [parsing completed 27ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/GsonAttributesParser.java]] [parsing completed 10ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/ByteArrayDataBlock.java]] [parsing completed 0ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/DataBlock.java]] [parsing completed 3ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/N5FSReader.java]] [parsing completed 6ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/AbstractGsonReader.java]] [parsing completed 4ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/CompressionAdapter.java]] [parsing completed 4ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/DefaultBlockReader.java]] [parsing completed 2ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/N5Writer.java]] [parsing completed 2ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/FloatArrayDataBlock.java]] [parsing completed 1ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/N5Reader.java]] [parsing completed 3ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/AbstractDataBlock.java]] [parsing completed 0ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/Lz4Compression.java]] [parsing completed 1ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/GzipCompression.java]] [parsing completed 1ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/RawCompression.java]] [parsing completed 1ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/DefaultBlockWriter.java]] [parsing completed 1ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/DataType.java]] [parsing completed 3ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/BlockWriter.java]] [parsing completed 0ms] [parsing started SimpleFileObject[/home/hanslovskyp/git/n5/src/main/java/org/janelia/saalfeldlab/n5/DatasetAttributes.java]] [parsing completed 1ms] [parsing started 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/usr/lib/jvm/java-9-openjdk/lib/modules,/home/hanslovskyp/git/n5/target/classes,/home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar,/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar,/home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar,/home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/parsington-1.0.1.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/gentyref-1.1.0.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/eventbus-1.4.jar,/home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar,/home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar,/home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar,.] [loading /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar(/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.class)] [loading /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar(/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.class)] [loading /modules/java.base/java/util/Comparator.class] [search path for source files: /home/hanslovskyp/git/n5/src/main/java,/home/hanslovskyp/git/n5/target/generated-sources/annotations] [search path for class files: /usr/lib/jvm/java-9-openjdk/lib/modules,/home/hanslovskyp/git/n5/target/classes,/home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar,/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar,/home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar,/home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.2/gson-2.8.2.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/scijava-common-2.69.0.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/parsington-1.0.1.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/gentyref-1.1.0.jar,/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.69.0/eventbus-1.4.jar,/home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar,/home/hanslovskyp/.m2/repository/com/googlecode/gentyref/gentyref/1.1.0/gentyref-1.1.0.jar,/home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar,.] [loading /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar(/org/apache/commons/compress/compressors/xz/XZCompressorInputStream.class)] [loading /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar(/org/apache/commons/compress/compressors/xz/XZCompressorOutputStream.class)] [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Round 1: input files: {org.janelia.saalfeldlab.n5.IntArrayDataBlock, org.janelia.saalfeldlab.n5.GsonAttributesParser, org.janelia.saalfeldlab.n5.ByteArrayDataBlock, org.janelia.saalfeldlab.n5.DataBlock, org.janelia.saalfeldlab.n5.N5FSReader, org.janelia.saalfeldlab.n5.AbstractGsonReader, org.janelia.saalfeldlab.n5.CompressionAdapter, org.janelia.saalfeldlab.n5.DefaultBlockReader, org.janelia.saalfeldlab.n5.N5Writer, org.janelia.saalfeldlab.n5.FloatArrayDataBlock, org.janelia.saalfeldlab.n5.N5Reader, org.janelia.saalfeldlab.n5.AbstractDataBlock, org.janelia.saalfeldlab.n5.Lz4Compression, org.janelia.saalfeldlab.n5.GzipCompression, org.janelia.saalfeldlab.n5.RawCompression, org.janelia.saalfeldlab.n5.DefaultBlockWriter, org.janelia.saalfeldlab.n5.DataType, org.janelia.saalfeldlab.n5.BlockWriter, org.janelia.saalfeldlab.n5.DatasetAttributes, org.janelia.saalfeldlab.n5.LongArrayDataBlock, org.janelia.saalfeldlab.n5.Bzip2Compression, org.janelia.saalfeldlab.n5.N5FSWriter, org.janelia.saalfeldlab.n5.BlockReader, org.janelia.saalfeldlab.n5.Compression, org.janelia.saalfeldlab.n5.ShortArrayDataBlock, org.janelia.saalfeldlab.n5.DoubleArrayDataBlock, org.janelia.saalfeldlab.n5.XzCompression} annotations: [java.lang.Override, java.lang.SuppressWarnings, org.janelia.saalfeldlab.n5.Compression.CompressionType, org.janelia.saalfeldlab.n5.Compression.CompressionParameter, java.lang.annotation.Retention, java.lang.annotation.Inherited, java.lang.annotation.Target, org.scijava.annotations.Indexable] last round: false Processor org.scijava.annotations.AnnotationProcessor matches [org.scijava.annotations.Indexable, java.lang.Override, java.lang.SuppressWarnings, org.janelia.saalfeldlab.n5.Compression.CompressionType, org.janelia.saalfeldlab.n5.Compression.CompressionParameter, java.lang.annotation.Inherited, java.lang.annotation.Target, java.lang.annotation.Retention] and returns false. Round 2: input files: {} annotations: [] last round: true [total 618ms] [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) [INFO] 1 error [INFO] ------------------------------------------------------------- [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2.953 s [INFO] Finished at: 2018-06-19T17:17:22-04:00 [INFO] Final Memory: 27M/90M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project n5: Compilation failure [ERROR] java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType [ERROR] at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) [ERROR] at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) [ERROR] at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) [ERROR] at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) [ERROR] at java.base/java.nio.file.Files.newByteChannel(Files.java:369) [ERROR] at java.base/java.nio.file.Files.newByteChannel(Files.java:415) [ERROR] at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) [ERROR] at java.base/java.nio.file.Files.newInputStream(Files.java:154) [ERROR] at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) [ERROR] at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) [ERROR] at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) [ERROR] at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) [ERROR] at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) [ERROR] at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) [ERROR] at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) [ERROR] at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) [ERROR] at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) [ERROR] at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) [ERROR] at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) [ERROR] at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) [ERROR] at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) [ERROR] at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) [ERROR] at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) [ERROR] at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) [ERROR] at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) [ERROR] at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) [ERROR] at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) [ERROR] at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [ERROR] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [ERROR] at java.base/java.lang.reflect.Method.invoke(Method.java:564) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) [ERROR] [ERROR] -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project n5: Compilation failure java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: org.apache.maven.plugin.compiler.CompilationFailureException: Compilation failure java.nio.file.NoSuchFileException: /home/hanslovskyp/git/n5/target/classes/META-INF/json/org.janelia.saalfeldlab.n5.Compression$CompressionType at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:116) at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:215) at java.base/java.nio.file.Files.newByteChannel(Files.java:369) at java.base/java.nio.file.Files.newByteChannel(Files.java:415) at java.base/java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384) at java.base/java.nio.file.Files.newInputStream(Files.java:154) at jdk.compiler/com.sun.tools.javac.file.PathFileObject.openInputStream(PathFileObject.java:451) at java.compiler@9.0.4/javax.tools.ForwardingFileObject.openInputStream(ForwardingFileObject.java:74) at org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:235) at org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:126) at org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:99) at org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:95) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.callProcessor(JavacProcessingEnvironment.java:968) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:884) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.access$2200(JavacProcessingEnvironment.java:108) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1206) at jdk.compiler/com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1315) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1246) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:922) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:142) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:96) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:90) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess(JavaxToolsCompiler.java:126) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile(JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute(CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:290) at org.apache.maven.cli.MavenCli.main(MavenCli.java:194) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:1161) at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) [ERROR] [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException ```

hanslovsky commented 6 years ago

cc @nthistle

hanslovsky commented 6 years ago

Observing the same issues with Java11:

JAVA_HOME=/home/hanslovskyp/Downloads/openjdk-11/jdk-11 mvn clean package
... fails as above

JAVA_HOME=/home/hanslovskyp/Downloads/openjdk-11/jdk-11 mvn -version
Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00)
Maven home: /opt/maven
Java version: 11, vendor: Oracle Corporation
Java home: /home/hanslovskyp/Downloads/openjdk-11/jdk-11
Default locale: en_US, platform encoding: UTF-8
OS name: "linux", version: "4.18.5-arch1-1-arch", arch: "amd64", family: "unix"

/home/hanslovskyp/Downloads/openjdk-11/jdk-11/bin/java -version
openjdk version "11" 2018-09-25
OpenJDK Runtime Environment 18.9 (build 11+28)
OpenJDK 64-Bit Server VM 18.9 (build 11+28, mixed mode)

axtimwalde commented 6 years ago

Still?

hanslovsky commented 6 years ago

Fresh Linux install at the time of posting.

axtimwalde commented 6 years ago

I mean after the bump to pom-scijava-23.1.1?

axtimwalde commented 6 years ago

Could be an issue in pom-scijava's class indexing mechanism? Just guessing currently, will look at this after Sep 13.

hanslovsky commented 6 years ago

I checked out latest master. If there is a different commit that works I'll be happy to try

hanslovsky commented 6 years ago

Update: I wasn't aware of 9277f546b21b1c3c98f84a34ada295c50f727d38 and my previous comment was with respect to its parent. That solves the issue for Java 10/11. Java 9 fails differently now:

[ERROR] Failed to execute goal org.apache.maven.plugins:maven-jar-plugin:2.6:jar (default-jar) on project n5: Execution default-jar of goal org.apache.maven.plugins:maven-jar-plugin:2.6:jar failed: An API incompatibility was encountered while executing org.apache.maven.plugins:maven-jar-plugin:2.6:jar: java.lang.ExceptionInInitializerError: null
[ERROR] -----------------------------------------------------
[ERROR] realm =    plugin>org.apache.maven.plugins:maven-jar-plugin:2.6
[ERROR] strategy = org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy
[ERROR] urls[0] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/plugins/maven-jar-plugin/2.6/maven-jar-plugin-2.6.jar
[ERROR] urls[1] = file:/home/hanslovskyp/.m2/repository/org/slf4j/slf4j-jdk14/1.5.6/slf4j-jdk14-1.5.6.jar
[ERROR] urls[2] = file:/home/hanslovskyp/.m2/repository/org/slf4j/jcl-over-slf4j/1.5.6/jcl-over-slf4j-1.5.6.jar
[ERROR] urls[3] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/reporting/maven-reporting-api/2.2.1/maven-reporting-api-2.2.1.jar
[ERROR] urls[4] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/doxia/doxia-sink-api/1.1/doxia-sink-api-1.1.jar
[ERROR] urls[5] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/doxia/doxia-logging-api/1.1/doxia-logging-api-1.1.jar
[ERROR] urls[6] = file:/home/hanslovskyp/.m2/repository/junit/junit/3.8.1/junit-3.8.1.jar
[ERROR] urls[7] = file:/home/hanslovskyp/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar
[ERROR] urls[8] = file:/home/hanslovskyp/.m2/repository/org/codehaus/plexus/plexus-interactivity-api/1.0-alpha-4/plexus-interactivity-api-1.0-alpha-4.jar
[ERROR] urls[9] = file:/home/hanslovskyp/.m2/repository/backport-util-concurrent/backport-util-concurrent/3.1/backport-util-concurrent-3.1.jar
[ERROR] urls[10] = file:/home/hanslovskyp/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar
[ERROR] urls[11] = file:/home/hanslovskyp/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar
[ERROR] urls[12] = file:/home/hanslovskyp/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.11/plexus-interpolation-1.11.jar
[ERROR] urls[13] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/maven-archiver/2.6/maven-archiver-2.6.jar
[ERROR] urls[14] = file:/home/hanslovskyp/.m2/repository/org/apache/maven/shared/maven-shared-utils/0.7/maven-shared-utils-0.7.jar
[ERROR] urls[15] = file:/home/hanslovskyp/.m2/repository/com/google/code/findbugs/jsr305/2.0.1/jsr305-2.0.1.jar
[ERROR] urls[16] = file:/home/hanslovskyp/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.20/plexus-utils-3.0.20.jar
[ERROR] urls[17] = file:/home/hanslovskyp/.m2/repository/org/codehaus/plexus/plexus-archiver/2.9/plexus-archiver-2.9.jar
[ERROR] urls[18] = file:/home/hanslovskyp/.m2/repository/org/codehaus/plexus/plexus-io/2.4/plexus-io-2.4.jar
[ERROR] urls[19] = file:/home/hanslovskyp/.m2/repository/commons-io/commons-io/2.2/commons-io-2.2.jar
[ERROR] urls[20] = file:/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.9/commons-compress-1.9.jar
[ERROR] Number of foreign imports: 1
[ERROR] import: Entry[import  from realm ClassRealm[project>org.janelia.saalfeldlab:n5:2.0.3-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]]]
[ERROR] 
[ERROR] -----------------------------------------------------
[ERROR] 
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginContainerException

Will close this issue because this is unrelated.

hanslovsky commented 6 years ago

FYI, for Java 11 compilation, set this property in pom.xml:

<maven-jar-plugin.version>3.0.0</maven-jar-plugin.version>

That trick does not work for Java 9, though.

ctrueden commented 5 years ago

FWIW, pom-scijava 24.0.0 is set to maven-jar-plugin 3.1.0. Also, I tried building n5 latest master with Java 9 on my macOS system and it compiled successfully.

saalfeldlab / n5

n5 does not compile with Java 9/10 #35