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saalfeldlab / paintera

GNU General Public License v2.0
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Paintera does not compile with Java 9/10 #91

Closed hanslovsky closed 6 years ago

hanslovsky commented 6 years ago 
JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn clean package &> mvn-log
[INFO] Scanning for projects...
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Building Paintera 0.1.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ paintera ---
[INFO] Deleting /home/hanslovskyp/git/paintera/target
[INFO] 
[INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ paintera ---
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ paintera ---
[INFO] Executing: /bin/sh -c cd '/home/hanslovskyp/git/paintera' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/hanslovskyp/git/paintera
[INFO] Storing buildNumber: 0e576785f8de7023c1615d7c9ef9da4ce802b6b1 at timestamp: 1529443360639
[INFO] Storing buildScmBranch: master
[INFO] 
[INFO] --- scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) @ paintera ---
[INFO] Setting rootdir: /home/hanslovskyp/git/paintera
[INFO] 
[INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ paintera ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ paintera ---
[INFO] Compiling 317 source files to /home/hanslovskyp/git/paintera/target/classes
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4.583 s
[INFO] Finished at: 2018-06-19T17:22:43-04:00
[INFO] Final Memory: 32M/109M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project paintera: Fatal error compiling: CompilerException: NullPointerException -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException

https://github.com/saalfeldlab/n5/issues/35 might be relevant

hanslovsky commented 6 years ago
`JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn -X clean package` (1422 lines) ``` Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00) Maven home: /opt/maven Java version: 9.0.4, vendor: Oracle Corporation Java home: /usr/lib/jvm/java-9-openjdk Default locale: en_US, platform encoding: UTF-8 OS name: "linux", version: "4.16.8-1-arch", arch: "amd64", family: "unix" [DEBUG] Created new class realm maven.api [DEBUG] Importing foreign packages into class realm maven.api [DEBUG] Imported: javax.annotation.* < plexus.core [DEBUG] Imported: javax.enterprise.inject.* < plexus.core [DEBUG] Imported: javax.enterprise.util.* < plexus.core [DEBUG] Imported: javax.inject.* < plexus.core [DEBUG] Imported: org.apache.maven.* < plexus.core [DEBUG] Imported: org.apache.maven.artifact < plexus.core [DEBUG] Imported: org.apache.maven.classrealm < plexus.core [DEBUG] Imported: org.apache.maven.cli < plexus.core [DEBUG] Imported: org.apache.maven.configuration < plexus.core [DEBUG] Imported: org.apache.maven.exception < plexus.core [DEBUG] Imported: org.apache.maven.execution < plexus.core [DEBUG] Imported: org.apache.maven.execution.scope < plexus.core [DEBUG] Imported: org.apache.maven.lifecycle < plexus.core [DEBUG] Imported: org.apache.maven.model < plexus.core [DEBUG] Imported: org.apache.maven.monitor < plexus.core [DEBUG] Imported: org.apache.maven.plugin < plexus.core [DEBUG] Imported: org.apache.maven.profiles < plexus.core [DEBUG] Imported: org.apache.maven.project < plexus.core [DEBUG] Imported: org.apache.maven.reporting < plexus.core [DEBUG] Imported: org.apache.maven.repository < plexus.core [DEBUG] Imported: org.apache.maven.rtinfo < plexus.core [DEBUG] Imported: org.apache.maven.settings < plexus.core [DEBUG] Imported: org.apache.maven.toolchain < plexus.core [DEBUG] Imported: org.apache.maven.usability < plexus.core [DEBUG] Imported: org.apache.maven.wagon.* < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core [DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core [DEBUG] Imported: org.apache.maven.wagon.events < plexus.core [DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core [DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core [DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core [DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core [DEBUG] Imported: org.codehaus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.* < plexus.core [DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core [DEBUG] Imported: org.codehaus.plexus.component < plexus.core [DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core [DEBUG] Imported: org.codehaus.plexus.container < plexus.core [DEBUG] Imported: org.codehaus.plexus.context < plexus.core [DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core [DEBUG] Imported: org.codehaus.plexus.logging < plexus.core [DEBUG] Imported: org.codehaus.plexus.personality < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core [DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core [DEBUG] Imported: org.eclipse.aether.* < plexus.core [DEBUG] Imported: org.eclipse.aether.artifact < plexus.core [DEBUG] Imported: org.eclipse.aether.collection < plexus.core [DEBUG] Imported: org.eclipse.aether.deployment < plexus.core [DEBUG] Imported: org.eclipse.aether.graph < plexus.core [DEBUG] Imported: org.eclipse.aether.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.installation < plexus.core [DEBUG] Imported: org.eclipse.aether.internal.impl < plexus.core [DEBUG] Imported: org.eclipse.aether.metadata < plexus.core [DEBUG] Imported: org.eclipse.aether.repository < plexus.core [DEBUG] Imported: org.eclipse.aether.resolution < plexus.core [DEBUG] Imported: org.eclipse.aether.spi < plexus.core [DEBUG] Imported: org.eclipse.aether.transfer < plexus.core [DEBUG] Imported: org.eclipse.aether.version < plexus.core [DEBUG] Imported: org.fusesource.jansi.* < plexus.core [DEBUG] Imported: org.slf4j.* < plexus.core [DEBUG] Imported: org.slf4j.helpers.* < plexus.core [DEBUG] Imported: org.slf4j.spi.* < plexus.core [DEBUG] Populating class realm maven.api [INFO] Error stacktraces are turned on. [DEBUG] Message scheme: color [DEBUG] Message styles: debug info warning error success failure strong mojo project [DEBUG] Reading global settings from /opt/maven/conf/settings.xml [DEBUG] Reading user settings from /home/hanslovskyp/.m2/settings.xml [DEBUG] Reading global toolchains from /opt/maven/conf/toolchains.xml [DEBUG] Reading user toolchains from /home/hanslovskyp/.m2/toolchains.xml [DEBUG] Using local repository at /home/hanslovskyp/.m2/repository [DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10.0 for /home/hanslovskyp/.m2/repository [INFO] Scanning for projects... [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=1228646, ConflictMarker.markTime=626894, ConflictMarker.nodeCount=17, ConflictIdSorter.graphTime=722717, ConflictIdSorter.topsortTime=565713, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=5939503, ConflictResolver.conflictItemCount=16, DefaultDependencyCollector.collectTime=119027395, DefaultDependencyCollector.transformTime=12283947} [DEBUG] org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0: [DEBUG] org.apache.maven.wagon:wagon-http-shared:jar:1.0:compile [DEBUG] commons-httpclient:commons-httpclient:jar:3.1:compile [DEBUG] commons-codec:commons-codec:jar:1.2:compile [DEBUG] commons-logging:commons-logging:jar:1.1.1:compile [DEBUG] commons-io:commons-io:jar:2.0.1:compile [DEBUG] org.jsoup:jsoup:jar:1.6.1:compile [DEBUG] org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0:compile [DEBUG] org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0:compile [DEBUG] org.slf4j:slf4j-api:jar:1.5.3:compile [DEBUG] org.slf4j:slf4j-nop:jar:1.5.3:runtime [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:1.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:1.4.2:compile [DEBUG] Created new class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Importing foreign packages into class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Imported: < maven.api [DEBUG] Populating class realm extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-webdav-jackrabbit:jar:1.0 [DEBUG] Included: org.apache.maven.wagon:wagon-http-shared:jar:1.0 [DEBUG] Included: commons-httpclient:commons-httpclient:jar:3.1 [DEBUG] Included: commons-codec:commons-codec:jar:1.2 [DEBUG] Included: commons-logging:commons-logging:jar:1.1.1 [DEBUG] Included: commons-io:commons-io:jar:2.0.1 [DEBUG] Included: org.jsoup:jsoup:jar:1.6.1 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-webdav:jar:1.5.0 [DEBUG] Included: org.apache.jackrabbit:jackrabbit-jcr-commons:jar:1.5.0 [DEBUG] Included: org.slf4j:slf4j-nop:jar:1.5.3 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.4.2 [DEBUG] Extension realms for project org.janelia.saalfeldlab:paintera:jar:0.1.0-SNAPSHOT: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Created new class realm project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Looking up lifecycle mappings for packaging jar from ClassRealm[project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava:pom:21.0.0: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] Extension realms for project org.scijava:pom-scijava-base:pom:3.5.2: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916]] [DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]] [DEBUG] === REACTOR BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:paintera:jar:0.1.0-SNAPSHOT [DEBUG] Tasks: [clean, package] [DEBUG] Style: Regular [DEBUG] ======================================================================= [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Paintera 0.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] [DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] [DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] [DEBUG] === PROJECT BUILD PLAN ================================================ [DEBUG] Project: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Dependencies (collect): [] [DEBUG] Dependencies (resolve): [compile, runtime, test] [DEBUG] Repositories (dependencies): [saalfeld-lab-maven-repo (https://saalfeldlab.github.io/maven, default, releases+snapshots), imagej.public (https://maven.imagej.net/content/groups/public, default, releases+snapshots), central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, default, releases)] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean (default-clean) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.clean.excludeDefaultDirectories} ${maven.clean.failOnError} ${maven.clean.followSymLinks} ${maven.clean.retryOnError} ${maven.clean.skip} ${maven.clean.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 0.1.0-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources (default-resources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.resources.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.main.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:3.0.2:testResources (default-testResources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.skip} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.7.0:testCompile (default-testCompile) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.compiler.compilerId} ${maven.compiler.compilerReuseStrategy} ${maven.compiler.compilerVersion} ${maven.compiler.debug} ${maven.compiler.debuglevel} ${encoding} ${maven.compiler.executable} ${maven.compiler.failOnError} ${maven.compiler.failOnWarning} ${maven.compiler.forceJavacCompilerUse} ${maven.compiler.fork} ${maven.compiler.maxmem} ${maven.compiler.meminitial} ${maven.compiler.optimize} ${maven.compiler.parameters} ${maven.compiler.release} ${maven.compiler.showDeprecation} ${maven.compiler.showWarnings} ${maven.test.skip} ${maven.compiler.skipMultiThreadWarning} 1.8 ${lastModGranularityMs} 1.8 ${maven.compiler.testRelease} 1.8 1.8 false ${maven.compiler.verbose} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.19.1:test (default-test) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.test.additionalClasspath} -Xms512m -Xmx512m -Dapple.awt.UIElement="true" ${childDelegation} ${maven.test.dependency.excludes} ${maven.surefire.debug} ${dependenciesToScan} ${disableXmlReport} ${enableAssertions} ${excludedGroups} ${surefire.excludesFile} ${surefire.failIfNoSpecifiedTests} ${failIfNoTests} ${forkCount} ${forkMode} ${surefire.timeout} ${groups} ${surefire.includesFile} ${junitArtifactName} ${jvm} ${objectFactory} ${parallel} ${parallelOptimized} ${surefire.parallel.forcedTimeout} ${surefire.parallel.timeout} ${perCoreThreadCount} ${plugin.artifactMap} ${surefire.printSummary} ${project.artifactMap} ${maven.test.redirectTestOutputToFile} ${surefire.reportFormat} ${surefire.reportNameSuffix} ${surefire.rerunFailingTestsCount} ${reuseForks} ${surefire.runOrder} ${surefire.shutdown} ${maven.test.skip} ${surefire.skipAfterFailureCount} ${maven.test.skip.exec} ${skipTests} ${surefire.suiteXmlFiles} ${test} ${maven.test.failure.ignore} ${testNGArtifactName} ${threadCount} ${threadCountClasses} ${threadCountMethods} ${threadCountSuites} ${trimStackTrace} ${surefire.useFile} ${surefire.useManifestOnlyJar} ${surefire.useSystemClassLoader} ${useUnlimitedThreads} ${basedir} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:jar (default-jar) [DEBUG] Style: Regular [DEBUG] Configuration: true true true ${buildNumber} 2018-06-19T21:23:44+0000 ${maven.jar.classifier} ${jar.finalName} ${jar.forceCreation} true ${jar.useDefaultManifestFile} [DEBUG] --- init fork of org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] Dependencies (collect): [] [DEBUG] Dependencies (resolve): [] [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property (sanitize-version) [DEBUG] Style: Regular [DEBUG] Configuration: false sanitizedVersion ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ $1.$2.$3 0.1.0-SNAPSHOT [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.codehaus.mojo:buildnumber-maven-plugin:1.4:create (default) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.buildNumber.buildNumberPropertyName} ${maven.buildNumber.doCheck} ${maven.buildNumber.doUpdate} ${maven.buildNumber.format} true ${maven.buildNumber.locale} ${password} UNKNOWN ${maven.buildNumber.scmBranchPropertyName} ${maven.buildNumber.scmDirectory} ${maven.buildNumber.shortRevisionLength} ${maven.buildNumber.skip} ${maven.buildNumber.timestampFormat} ${maven.buildNumber.timestampPropertyName} ${maven.buildNumber.useLastCommittedRevision} ${username} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.scijava:scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) [DEBUG] Style: Regular [DEBUG] Configuration: ${setRootdir.rootdirPropertyName} [DEBUG] --- exit fork of org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) --- [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (attach-sources) [DEBUG] Style: Regular [DEBUG] Configuration: ${maven.source.attach} ${maven.source.classifier} ${maven.source.excludeResources} ${maven.source.forceCreation} ${maven.source.includePom} ${maven.source.skip} ${maven.source.useDefaultExcludes} ${maven.source.useDefaultManifestFile} [DEBUG] ----------------------------------------------------------------------- [DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.6:test-jar (default) [DEBUG] Style: Regular [DEBUG] Configuration: true true true ${buildNumber} 2018-06-19T21:23:44+0000 ${jar.finalName} ${jar.forceCreation} ${maven.test.skip} true ${jar.useDefaultManifestFile} [DEBUG] ======================================================================= [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=1485243, ConflictMarker.markTime=545459, ConflictMarker.nodeCount=208, ConflictIdSorter.graphTime=518711, ConflictIdSorter.topsortTime=118451, ConflictIdSorter.conflictIdCount=89, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=8024961, ConflictResolver.conflictItemCount=183, DefaultDependencyCollector.collectTime=409970051, DefaultDependencyCollector.transformTime=10721320} [DEBUG] org.janelia.saalfeldlab:paintera:jar:0.1.0-SNAPSHOT [DEBUG] org.janelia.saalfeldlab:n5-label-multisets:jar:0.2.0:compile [DEBUG] sc.fiji:bigdataviewer-core:jar:5.0.0:compile [DEBUG] sc.fiji:spim_data:jar:2.2.1:compile (version managed from 2.2.1) [DEBUG] cisd:jhdf5:jar:14.12.6:compile (version managed from 14.12.6) [DEBUG] commons-lang:commons-lang:jar:2.6:compile (version managed from 2.4) [DEBUG] commons-io:commons-io:jar:2.6:compile (version managed from 1.4) [DEBUG] org.jdom:jdom2:jar:2.0.6:compile (version managed from 2.0.6) [DEBUG] org.scijava:ui-behaviour:jar:1.7.3:compile (version managed from 1.7.2) [DEBUG] org.yaml:snakeyaml:jar:1.13:compile [DEBUG] com.google.code.gson:gson:jar:2.8.3:compile [DEBUG] net.sf.trove4j:trove4j:jar:3.0.3:compile [DEBUG] net.imglib2:imglib2:jar:5.1.0:compile [DEBUG] net.imglib2:imglib2-algorithm:jar:0.9.0:compile [DEBUG] net.imglib2:imglib2-roi:jar:0.5.1:compile (version managed from 0.5.0) [DEBUG] gov.nist.math:jama:jar:1.0.3:compile (version managed from 1.0.3) [DEBUG] org.ojalgo:ojalgo:jar:43.0:compile (version managed from 43.0) [DEBUG] net.imglib2:imglib2-ui:jar:2.0.0:compile [DEBUG] net.imglib2:imglib2-realtransform:jar:2.0.0:compile [DEBUG] jitk:jitk-tps:jar:3.0.0:compile (version managed from 3.0.0) [DEBUG] com.googlecode.efficient-java-matrix-library:ejml:jar:0.24:compile [DEBUG] log4j:log4j:jar:1.2.17:compile [DEBUG] sc.fiji:bigdataviewer-vistools:jar:1.0.0-beta-11:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] commons-collections:commons-collections:jar:3.2.2:compile [DEBUG] org.slf4j:slf4j-api:jar:1.7.25:compile [DEBUG] org.slf4j:slf4j-simple:jar:1.7.25:compile [DEBUG] net.imglib2:imglib2-cache:jar:1.0.0-beta-8:compile [DEBUG] com.github.ben-manes.caffeine:caffeine:jar:2.4.0:compile [DEBUG] org.janelia.saalfeldlab:n5:jar:2.0.2:compile [DEBUG] org.tukaani:xz:jar:1.6:compile [DEBUG] org.apache.commons:commons-compress:jar:1.14:compile [DEBUG] net.jpountz.lz4:lz4:jar:1.3.0:compile [DEBUG] org.scijava:scijava-common:jar:2.71.1:compile (version managed from 2.69.0) [DEBUG] org.scijava:parsington:jar:1.0.1:compile (version managed from 1.0.1) [DEBUG] org.bushe:eventbus:jar:1.4:compile [DEBUG] org.janelia.saalfeldlab:n5-hdf5:jar:1.0.2:compile [DEBUG] org.janelia.saalfeldlab:n5-imglib2:jar:3.0.0:compile [DEBUG] org.janelia.saalfeldlab:n5-google-cloud:jar:2.3.1:compile [DEBUG] com.google.cloud:google-cloud-storage:jar:1.20.0:compile [DEBUG] com.google.cloud:google-cloud-core:jar:1.20.0:compile [DEBUG] joda-time:joda-time:jar:2.9.9:compile (version managed from 2.9.2) [DEBUG] com.google.code.findbugs:jsr305:jar:3.0.1:compile [DEBUG] com.google.api:api-common:jar:1.4.0:compile [DEBUG] com.google.api:gax:jar:1.19.0:compile [DEBUG] org.threeten:threetenbp:jar:1.3.3:compile [DEBUG] com.google.protobuf:protobuf-java-util:jar:3.5.1:compile [DEBUG] com.google.protobuf:protobuf-java:jar:3.5.1:compile [DEBUG] com.google.api.grpc:proto-google-common-protos:jar:1.2.0:compile [DEBUG] com.google.api.grpc:proto-google-iam-v1:jar:0.3.0:compile [DEBUG] com.google.cloud:google-cloud-core-http:jar:1.20.0:compile [DEBUG] com.google.auth:google-auth-library-credentials:jar:0.9.0:compile [DEBUG] com.google.auth:google-auth-library-oauth2-http:jar:0.9.0:compile [DEBUG] com.google.oauth-client:google-oauth-client:jar:1.23.0:compile [DEBUG] com.google.http-client:google-http-client-appengine:jar:1.23.0:compile [DEBUG] com.google.http-client:google-http-client-jackson:jar:1.23.0:compile [DEBUG] org.codehaus.jackson:jackson-core-asl:jar:1.9.11:compile [DEBUG] com.google.api:gax-httpjson:jar:0.36.0:compile [DEBUG] io.opencensus:opencensus-api:jar:0.11.1:compile [DEBUG] com.google.errorprone:error_prone_annotations:jar:2.2.0:compile [DEBUG] io.grpc:grpc-context:jar:1.9.0:compile [DEBUG] io.opencensus:opencensus-contrib-http-util:jar:0.11.1:compile [DEBUG] com.google.apis:google-api-services-storage:jar:v1-rev114-1.23.0:compile [DEBUG] com.google.cloud:google-cloud-resourcemanager:jar:0.38.0-alpha:compile [DEBUG] com.google.apis:google-api-services-cloudresourcemanager:jar:v1-rev470-1.23.0:compile [DEBUG] com.google.apis:google-api-services-oauth2:jar:v2-rev134-1.23.0:compile [DEBUG] com.google.api-client:google-api-client:jar:1.23.0:compile [DEBUG] com.google.http-client:google-http-client-jackson2:jar:1.23.0:compile [DEBUG] com.google.http-client:google-http-client:jar:1.23.0:compile [DEBUG] org.apache.httpcomponents:httpclient:jar:4.0.1:compile [DEBUG] org.apache.httpcomponents:httpcore:jar:4.0.1:compile [DEBUG] commons-codec:commons-codec:jar:1.11:compile (version managed from 1.3) [DEBUG] com.fasterxml.jackson.core:jackson-core:jar:2.1.3:compile [DEBUG] com.google.oauth-client:google-oauth-client-jetty:jar:1.23.0:compile [DEBUG] com.google.oauth-client:google-oauth-client-java6:jar:1.23.0:compile [DEBUG] org.mortbay.jetty:jetty:jar:6.1.26:compile [DEBUG] org.mortbay.jetty:jetty-util:jar:6.1.26:compile [DEBUG] org.mortbay.jetty:servlet-api:jar:2.5-20081211:compile [DEBUG] org.controlsfx:controlsfx:jar:8.40.14:compile [DEBUG] info.picocli:picocli:jar:3.0.0-beta-2:compile [DEBUG] org.clapper:javautil:jar:3.2.0:compile [DEBUG] javax.activation:activation:jar:1.1:compile [DEBUG] javax.mail:mail:jar:1.4.3:compile [DEBUG] asm:asm:jar:3.3.1:compile [DEBUG] asm:asm-commons:jar:3.3.1:compile [DEBUG] asm:asm-tree:jar:3.3.1:compile [DEBUG] commons-logging:commons-logging:jar:1.2:compile (version managed from 1.1.1) [DEBUG] org.slf4j:slf4j-jdk14:jar:1.7.25:compile (version managed from 1.6.4) [DEBUG] com.google.guava:guava:jar:21.0:compile [INFO] [INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=230476, ConflictMarker.markTime=33733, ConflictMarker.nodeCount=15, ConflictIdSorter.graphTime=103295, ConflictIdSorter.topsortTime=23606, ConflictIdSorter.conflictIdCount=13, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=396837, ConflictResolver.conflictItemCount=15, DefaultDependencyCollector.collectTime=38221077, DefaultDependencyCollector.transformTime=816164} [DEBUG] org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0 [DEBUG] Included: org.apache.maven.plugins:maven-clean-plugin:jar:3.0.0 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-clean-plugin:3.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-clean-plugin:3.0.0:clean' with basic configurator --> [DEBUG] (f) directory = /home/hanslovskyp/git/paintera/target [DEBUG] (f) excludeDefaultDirectories = false [DEBUG] (f) failOnError = true [DEBUG] (f) followSymLinks = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/paintera/target/classes [DEBUG] (f) reportDirectory = /home/hanslovskyp/git/paintera/target/classes [DEBUG] (f) retryOnError = true [DEBUG] (f) skip = false [DEBUG] (f) testOutputDirectory = /home/hanslovskyp/git/paintera/target/test-classes [DEBUG] -- end configuration -- [INFO] Deleting /home/hanslovskyp/git/paintera/target [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-bodies.xml [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-grayscale.xml [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-graytiles.xml [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/bigcat-keyconfig.yaml [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-superpixels.xml [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/bigcat-broker.json [INFO] Deleting file /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-grayscale-bodies.xml [INFO] Deleting directory /home/hanslovskyp/git/paintera/target/classes [INFO] Deleting directory /home/hanslovskyp/git/paintera/target/generated-sources/annotations [INFO] Deleting directory /home/hanslovskyp/git/paintera/target/generated-sources [INFO] Deleting directory /home/hanslovskyp/git/paintera/target [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/paintera/target/classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/paintera/target/test-classes [DEBUG] Skipping non-existing directory /home/hanslovskyp/git/paintera/target/classes [INFO] [INFO] --- build-helper-maven-plugin:1.12:regex-property (sanitize-version) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=336146, ConflictMarker.markTime=212177, ConflictMarker.nodeCount=166, ConflictIdSorter.graphTime=128019, ConflictIdSorter.topsortTime=80107, ConflictIdSorter.conflictIdCount=52, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2610594, ConflictResolver.conflictItemCount=107, DefaultDependencyCollector.collectTime=101525055, DefaultDependencyCollector.transformTime=3409018} [DEBUG] org.codehaus.mojo:build-helper-maven-plugin:jar:1.12: [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.beanshell:bsh:jar:2.0b4:compile [DEBUG] org.apache.maven.shared:file-management:jar:3.0.0:compile [DEBUG] org.apache.maven.shared:maven-shared-io:jar:3.0.0:compile [DEBUG] org.apache.maven:maven-compat:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:2.10:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] commons-io:commons-io:jar:2.4:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12 [DEBUG] Included: org.codehaus.mojo:build-helper-maven-plugin:jar:1.12 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.beanshell:bsh:jar:2.0b4 [DEBUG] Included: org.apache.maven.shared:file-management:jar:3.0.0 [DEBUG] Included: org.apache.maven.shared:maven-shared-io:jar:3.0.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: commons-io:commons-io:jar:2.4 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Configuring mojo org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property from plugin realm ClassRealm[plugin>org.codehaus.mojo:build-helper-maven-plugin:1.12, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:build-helper-maven-plugin:1.12:regex-property' with basic configurator --> [DEBUG] (f) failIfNoMatch = false [DEBUG] (f) name = sanitizedVersion [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml [DEBUG] (f) regex = ^([0-9]+)\.([0-9]+)\.([0-9]+).*$ [DEBUG] (f) replacement = $1.$2.$3 [DEBUG] (f) toLowerCase = false [DEBUG] (f) toUpperCase = false [DEBUG] (f) value = 0.1.0-SNAPSHOT [DEBUG] -- end configuration -- [DEBUG] define property sanitizedVersion = "0.1.0" [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=417511, ConflictMarker.markTime=202120, ConflictMarker.nodeCount=161, ConflictIdSorter.graphTime=144781, ConflictIdSorter.topsortTime=113143, ConflictIdSorter.conflictIdCount=63, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=3366694, ConflictResolver.conflictItemCount=147, DefaultDependencyCollector.collectTime=81690439, DefaultDependencyCollector.transformTime=4321493} [DEBUG] org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4: [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile [DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.12:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile [DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime [DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime [DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime [DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.2.1:compile [DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.1:compile [DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.1:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile [DEBUG] commons-cli:commons-cli:jar:1.2:compile [DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile [DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile [DEBUG] classworlds:classworlds:jar:1.1:compile [DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile [DEBUG] org.apache.maven.scm:maven-scm-api:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4:compile [DEBUG] commons-lang:commons-lang:jar:2.6:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4:compile [DEBUG] commons-io:commons-io:jar:2.2:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4:compile [DEBUG] org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4:compile [DEBUG] com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1:compile [DEBUG] net.java.dev.jna:jna:jar:3.5.2:compile [DEBUG] org.tmatesoft.svnkit:svnkit:jar:1.8.5:compile [DEBUG] com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.core:jar:0.0.7:compile [DEBUG] org.tmatesoft.sqljet:sqljet:jar:1.1.10:compile [DEBUG] org.antlr:antlr-runtime:jar:3.4:compile [DEBUG] net.java.dev.jna:platform:jar:3.5.2:compile [DEBUG] com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7:compile [DEBUG] com.jcraft:jsch.agentproxy.pageant:jar:0.0.7:compile [DEBUG] de.regnis.q.sequence:sequence-library:jar:1.0.2:compile [DEBUG] com.trilead:trilead-ssh2:jar:1.0.0-build217:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.21:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] Created new class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4 [DEBUG] Included: org.codehaus.mojo:buildnumber-maven-plugin:jar:1.4 [DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11 [DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6 [DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6 [DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1 [DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1 [DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1 [DEBUG] Included: commons-cli:commons-cli:jar:1.2 [DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 [DEBUG] Included: org.apache.maven.scm:maven-scm-api:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-manager-plexus:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-bazaar:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svnexe:jar:1.9.4 [DEBUG] Included: commons-lang:commons-lang:jar:2.6 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-gitexe:jar:1.9.4 [DEBUG] Included: commons-io:commons-io:jar:2.2 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-git-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-svn-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvsexe:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-cvs-commons:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-starteam:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-clearcase:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-perforce:jar:1.9.4 [DEBUG] Included: org.apache.maven.scm:maven-scm-provider-hg:jar:1.9.4 [DEBUG] Included: com.google.code.maven-scm-provider-svnjava:maven-scm-provider-svnjava:jar:2.1.1 [DEBUG] Included: net.java.dev.jna:jna:jar:3.5.2 [DEBUG] Included: org.tmatesoft.svnkit:svnkit:jar:1.8.5 [DEBUG] Included: com.jcraft:jsch.agentproxy.svnkit-trilead-ssh2:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.core:jar:0.0.7 [DEBUG] Included: org.tmatesoft.sqljet:sqljet:jar:1.1.10 [DEBUG] Included: org.antlr:antlr-runtime:jar:3.4 [DEBUG] Included: net.java.dev.jna:platform:jar:3.5.2 [DEBUG] Included: com.jcraft:jsch.agentproxy.connector-factory:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-jna:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.usocket-nc:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.sshagent:jar:0.0.7 [DEBUG] Included: com.jcraft:jsch.agentproxy.pageant:jar:0.0.7 [DEBUG] Included: de.regnis.q.sequence:sequence-library:jar:1.0.2 [DEBUG] Included: com.trilead:trilead-ssh2:jar:1.0.0-build217 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.21 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.4 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Configuring mojo org.codehaus.mojo:buildnumber-maven-plugin:1.4:create from plugin realm ClassRealm[plugin>org.codehaus.mojo:buildnumber-maven-plugin:1.4, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.codehaus.mojo:buildnumber-maven-plugin:1.4:create' with basic configurator --> [DEBUG] (s) buildNumberPropertiesFileLocation = /home/hanslovskyp/git/paintera/buildNumber.properties [DEBUG] (f) buildNumberPropertyName = buildNumber [DEBUG] (s) doCheck = false [DEBUG] (s) doUpdate = false [DEBUG] (f) getRevisionOnlyOnce = true [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml] [DEBUG] (s) revisionOnScmFailure = UNKNOWN [DEBUG] (f) scmBranchPropertyName = scmBranch [DEBUG] (f) scmConnectionUrl = scm:git:git://github.com/saalfeldlab/bigcat [DEBUG] (f) scmDeveloperConnectionUrl = scm:git:git@github.com:saalfeldlab/bigcat.git [DEBUG] (s) scmDirectory = /home/hanslovskyp/git/paintera [DEBUG] (f) scmTag = HEAD [DEBUG] (f) session = org.apache.maven.execution.MavenSession@37b52340 [DEBUG] (f) settings = org.apache.maven.execution.SettingsAdapter@663bb8ef [DEBUG] (s) shortRevisionLength = 0 [DEBUG] (f) skip = false [DEBUG] (f) timestampPropertyName = timestamp [DEBUG] (f) useLastCommittedRevision = false [DEBUG] -- end configuration -- [DEBUG] Checking for local modifications: skipped. [DEBUG] Updating project files from SCM: skipped. [INFO] Executing: /bin/sh -c cd '/home/hanslovskyp/git/paintera' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/hanslovskyp/git/paintera [DEBUG] consume line 0e576785f8de7023c1615d7c9ef9da4ce802b6b1 [INFO] Storing buildNumber: 0e576785f8de7023c1615d7c9ef9da4ce802b6b1 at timestamp: 1529443425938 [INFO] Storing buildScmBranch: master [INFO] [INFO] --- scijava-maven-plugin:1.0.0:set-rootdir (set-rootdir) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=149460, ConflictMarker.markTime=66559, ConflictMarker.nodeCount=60, ConflictIdSorter.graphTime=33524, ConflictIdSorter.topsortTime=60622, ConflictIdSorter.conflictIdCount=30, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1080024, ConflictResolver.conflictItemCount=56, DefaultDependencyCollector.collectTime=31272088, DefaultDependencyCollector.transformTime=1442360} [DEBUG] org.scijava:scijava-maven-plugin:jar:1.0.0: [DEBUG] org.apache.maven.enforcer:enforcer-api:jar:1.3.1:compile [DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile [DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile [DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile [DEBUG] junit:junit:jar:4.11:test [DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-dependency-tree:jar:2.2:compile [DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:compile [DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3:compile [DEBUG] Created new class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Importing foreign packages into class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.scijava:scijava-maven-plugin:1.0.0 [DEBUG] Included: org.scijava:scijava-maven-plugin:jar:1.0.0 [DEBUG] Included: org.apache.maven.enforcer:enforcer-api:jar:1.3.1 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-dependency-tree:jar:2.2 [DEBUG] Included: org.eclipse.aether:aether-util:jar:0.9.0.M2 [DEBUG] Included: org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.3 [DEBUG] Configuring mojo org.scijava:scijava-maven-plugin:1.0.0:set-rootdir from plugin realm ClassRealm[plugin>org.scijava:scijava-maven-plugin:1.0.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.scijava:scijava-maven-plugin:1.0.0:set-rootdir' with basic configurator --> [DEBUG] (f) currentProject = MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml [DEBUG] (f) reactorProjects = [MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml] [DEBUG] (f) rootdirPropertyName = rootdir [DEBUG] -- end configuration -- [INFO] Setting rootdir: /home/hanslovskyp/git/paintera [INFO] [INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=67257, ConflictMarker.markTime=63137, ConflictMarker.nodeCount=68, ConflictIdSorter.graphTime=36108, ConflictIdSorter.topsortTime=31917, ConflictIdSorter.conflictIdCount=28, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1136385, ConflictResolver.conflictItemCount=67, DefaultDependencyCollector.collectTime=18527888, DefaultDependencyCollector.transformTime=1375802} [DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile [DEBUG] org.apache.maven.shared:maven-filtering:jar:3.1.1:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile [DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile [DEBUG] org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.24:compile [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2 [DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:3.0.2 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24 [DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:3.1.1 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0 [DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1 [DEBUG] Included: org.sonatype.plexus:plexus-build-api:jar:0.0.7 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.24 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:3.0.2, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:3.0.2:resources' with basic configurator --> [DEBUG] (f) addDefaultExcludes = true [DEBUG] (f) buildFilters = [] [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) escapeWindowsPaths = true [DEBUG] (f) fileNameFiltering = false [DEBUG] (s) includeEmptyDirs = false [DEBUG] (s) outputDirectory = /home/hanslovskyp/git/paintera/target/classes [DEBUG] (s) overwrite = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml [DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/hanslovskyp/git/paintera/src/main/resources, PatternSet [includes: {}, excludes: {}]}}] [DEBUG] (f) session = org.apache.maven.execution.MavenSession@37b52340 [DEBUG] (f) skip = false [DEBUG] (f) supportMultiLineFiltering = false [DEBUG] (f) useBuildFilters = true [DEBUG] (s) useDefaultDelimiters = true [DEBUG] -- end configuration -- [DEBUG] properties used {slf4j-ext.version=1.7.25, scijava-plugins-text-plain.version=0.1.3, scifio-jai-imageio.version=1.1.1, env.DIST_PACKAGES=/home/hanslovskyp/local/lib/python3.6/dist-packages, TopoJ_.version=2.0.1, scijava.jvm.test.version=1.8, jna.version=4.5.1, env.COLORFGBG=0;15, jama.version=1.0.3, imagej-ui-awt.version=0.3.1, maven-graph-plugin.version=1.39, batik-rasterizer.version=1.9.1, java.vm.specification.vendor=Oracle Corporation, IsoData_Classifier.version=2.0.1, blitz.version=5.4.5-ice36-b83, env.LIBRARY_PATH=/home/hanslovskyp/local/lib, exec-maven-plugin.version=1.5.0, slf4j-jdk14.version=1.7.25, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session2, env.LSCOLORS=Gxfxcxdxbxegedabagacad, BalloonSegmentation_.version=3.0.1, scijava-search.version=0.4.0, batik-css.version=1.9.1, jpedalSTD.version=2.80b11, fiji.version=2.0.0-pre-4, weka.version=3.9.2, swing-checkbox-tree.version=1.0.2, commons-io.version=2.6, logback-core.version=1.2.3, project.baseUri=file:/home/hanslovskyp/git/paintera/, CorrectBleach_.version=2.0.2, MTrack2_.version=2.0.1, license.licenseName=N/A, script-editor.version=0.1.6, bigwarp.version=3.1.0, kotlin-reflect.version=1.2.40, imagej.version=2.0.0-rc-65, jetty-jaspi.version=9.4.9.v20180320, java.vm.specification.version=9, TrackMate.version=3.7.0, imagej-deprecated.version=0.1.2, bigdataviewer_fiji.version=4.0.2, imagej-legacy.version=0.29.0, RATS_.version=2.0.2, user.home=/home/hanslovskyp, env.ZSH_CACHE_DIR=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh/cache/, jgrapht.version=0.8.3, env.COLORTERM=yes, postgresql.version=9.1-901-1.jdbc4, env.LANGUAGE=, batik-extension.version=1.9.1, minimaven.version=2.2.1, joml.version=1.9.9, env.PYTHONPATH=/home/hanslovskyp/local/lib/python3.6/dist-packages:/home/hanslovskyp/local/lib/python3.6/site-packages, os.version=4.16.8-1-ARCH, env.MAIL=/var/spool/mail/hanslovskyp, env.KDE_SESSION_UID=52164, jetty-monitor.version=9.4.9.v20180320, scijava-plugins-text-markdown.version=0.1.3, jetty-maven-plugin.version=9.4.9.v20180320, jetty-ant.version=9.4.9.v20180320, argLine=, TrackMate_.version=3.7.0, jetty-runner.version=9.4.9.v20180320, env._ZPLUG_PREZTO=zsh-users/prezto, jfreechart.version=1.5.0, j3dutils.version=1.6.0-scijava-2, level_sets.version=1.0.2, env.KONSOLE_PROFILE_NAME=Profile 1, additionalparam=-Xdoclint:none, commons-codec.version=1.11, scripting-java.version=0.4.1, proto.version=1.6.0, env.KONSOLE_DBUS_SERVICE=:1.31, 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gson.version=2.8.3, maven.build.timestamp.format=yyyy-MM-dd'T'HH:mm:ssZ, poi.version=3.17, imagej-matlab.version=0.7.2, env._ZPLUG_AWKPATH=/home/hanslovskyp/.zplug/misc/contrib, env.LESS_TERMCAP_us=, timestamp=1529443425938, Colour_Deconvolution.version=3.0.2, scripting-renjin.version=0.2.2, jetty-io.version=9.4.9.v20180320, batik-svg-dom.version=1.9.1, java.awt.printerjob=sun.print.PSPrinterJob, Thread_Killer.version=2.0.1, org.slf4j.simpleLogger.defaultLogLevel=debug, commons-text.version=1.3, kotlin.version=1.2.40, env.SESSION_MANAGER=local/saalfelds-ws2:@/tmp/.ICE-unix/1512,unix/saalfelds-ws2:/tmp/.ICE-unix/1512, commons-math3.version=3.6.1, commons-beanutils.version=1.9.3, jetty-jndi.version=9.4.9.v20180320, bUnwarpJ_.version=2.6.9, commons-logging.version=1.2, commons-lang3.version=3.7, Trainable_Segmentation.version=3.2.24, os.name=Linux, junit.version=4.12, bigdataviewer-core.version=5.0.0, scijava-maven-plugin.version=1.0.0, imglib2-ui.version=2.0.0, Series_Labeler.version=2.0.1, maven.build.timestamp=2018-06-19T21:23:46Z, SPIM_Opener.version=2.0.2, env.ZPLUG_REPOS=/home/hanslovskyp/.zplug/repos, blockmatching_.version=2.1.2, buildnumber-maven-plugin.version=1.4, jetty-webapp.version=9.4.9.v20180320, env.ZPLUG_LOADFILE=/home/hanslovskyp/.zplug/packages.zsh, guava.version=21.0, java3d.version=1.6.0-scijava-2, env.C_INCLUDE_PATH=/home/hanslovskyp/local/include, env.SHELL=/bin/zsh, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.GTK_MODULES=canberra-gtk-module, FlowJ.version=1.29.3, Color_Histogram.version=2.0.7, Statistical_Region_Merging.version=2.0.1, scripting-kotlin.version=0.1.0, java.vm.info=mixed mode, jai-codec.version=1.1.3, env.USER=hanslovskyp, java.class.version=53.0, FS_Align_TrakEM2.version=2.0.2, jai.version=1.1.3, TrakEM2.version=1.0i, sun.jnu.encoding=UTF-8, bigwarp_fiji.version=3.1.0, maven.build.version=Apache Maven 3.5.2 (NON-CANONICAL_2017-10-25T13:09:52+03:00_root; 2017-10-25T06:09:52-04:00), maven.home=/opt/maven, gluegen-rt-main.version=2.3.2, scripting-javascript.version=0.4.4, file.separator=/, batik-gui-util.version=1.9.1, line.separator= , batik-bridge.version=1.9.1, ome-xml.version=5.6.3, env.HG=/usr/bin/hg, Colocalisation_Analysis.version=3.0.2, bigdataviewer-vistools.version=1.0.0-beta-11, scripting-scala.version=0.2.1, IO_.version=3.0.4, bio-formats_plugins.version=5.8.2, env.ENHANCD_COMMAND=cd, env.LESS_TERMCAP_mb=, Bug_Submitter.version=2.1.1, env.LESS_TERMCAP_md=, env.LESS_TERMCAP_me=, jdom2.version=2.0.6, jogl.version=2.3.2, hsqldb.version=1.8.0.10, PIV_analyser.version=1.1.2, env._ZPLUG_URL=https://github.com/zplug/zplug, env.ZPLUG_PROTOCOL=HTTPS, env.KDE_FULL_SESSION=true, Fiji_Package_Maker.version=2.1.1, scripting-jython.version=0.4.2, jetty-jmx.version=9.4.9.v20180320, env.MOZ_PLUGIN_PATH=/usr/lib/mozilla/plugins, bij.version=0.1.1, env.PWD=/home/hanslovskyp/git/paintera, file.encoding.pkg=sun.io, java.class.path=/opt/maven/boot/plexus-classworlds-2.5.2.jar, env.HOME=/home/hanslovskyp, env.LESS_TERMCAP_se=, common.version=5.4.5-ice36-b83, groovy-maven-plugin.version=1.5, env.LESS_TERMCAP_so=, scripting-jruby.version=0.2.5, javassist.version=3.22.0-GA, jetty-start.version=9.4.9.v20180320, logback.version=1.2.3, env.LD_LIBRARY_PATH=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages, MorphoLibJ_.version=1.3.3, env.ZPLUG_ROOT=/home/hanslovskyp/.zplug, maven-clean-plugin.version=3.0.0, commons-lang.version=2.6, maven-surefire-plugin.version=2.19.1, Vaa3d_Reader.version=2.0.2, Helmholtz_Analysis.version=2.0.2, Stack_Manipulation.version=2.1.0, panorama_.version=3.0.2, scijava-jupyter-kernel.version=0.6.1, imagej-maven-plugin.version=0.7.0, env.ZPLUG_BIN=/home/hanslovskyp/.zplug/bin, tensorflow.version=1.6.0, env.ENHANCD_ROOT=/home/hanslovskyp/.zplug/repos/b4b4r07/enhancd, register_virtual_stack_slices.version=3.0.3, Fiji_Plugins.version=3.1.1, project.build.sourceEncoding=UTF-8, batik-transcoder.version=1.9.1, scifio-ome-xml.version=0.14.3, jmockit.version=1.33, user.dir=/home/hanslovskyp/git/paintera, scripting-groovy.version=0.2.7, env.XDG_CURRENT_DESKTOP=KDE, batik-ext.version=1.9.1, jetty-spring.version=9.4.9.v20180320, env.QT_AUTO_SCREEN_SCALE_FACTOR=0, java.specification.version=9, Auto_Local_Threshold.version=1.10.0, jetty-nosql.version=9.4.9.v20180320, View5D_.version=1.3.2, java.vendor.url=http://java.oracle.com/, sun.boot.library.path=/usr/lib/jvm/java-9-openjdk/lib, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher -X clean package, jdk.debug=release, maven.version=3.5.2, H5J_Loader_Plugin.version=1.0.6, Fiji_Developer.version=2.0.6, imglib2-cache.version=1.0.0-beta-8, jetty-xml.version=9.4.9.v20180320, env.CPLUS_INCLUDE_PATH=/home/hanslovskyp/local/include, java.specification.name=Java Platform API Specification, Linear_Kuwahara.version=2.0.1, maven-install-plugin.version=2.5.2, scripting-clojure.version=0.1.6, env.GEOMETRY_COLOR_ROOT=red, env.PROFILEHOME=, Graph_Cut.version=1.0.2, java.runtime.version=9.0.4+11, java.io.tmpdir=/tmp, java.version=9.0.4, LSM_Reader.version=4.1.2, build-helper-maven-plugin.version=1.12, mockito.version=2.18.3, java.vm.specification.name=Java Virtual Machine Specification, maven-assembly-plugin.version=3.0.0, java.library.path=/home/hanslovskyp/local/lib:/home/hanslovskyp/local/lib/python3.6/site-packages:/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib, TrakEM2_.version=1.0i, java.vendor=Oracle Corporation, jetty-server.version=9.4.9.v20180320, env.XAUTHORITY=/tmp/xauth-52164-_0, Fiji_Archipelago.version=2.0.1, env.LANG=en_US.UTF-8, Video_Editing.version=2.0.1, Stitching.version=3.1.5, env.XDG_DATA_DIRS=/usr/share:/usr/share:/usr/local/share, user.timezone=America/New_York, server.version=5.4.5-ice36-b83, Skeletonize3D_.version=2.1.1, Dichromacy_.version=2.1.1, env.ENHANCD_USE_FUZZY_MATCH=1, scijava.team.roles=founder,lead,developer,debugger,reviewer,support,maintainer, scenery.version=0.3.1, scijava-log-slf4j.version=1.0.5, Manual_Tracking.version=2.1.1, env.ANT_HOME=/usr/share/apache-ant, env.DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/52164/bus, weave_jy2java.version=2.1.0, maven-release-plugin.version=2.5.3, java.vm.name=OpenJDK 64-Bit Server VM, languagesupport.version=2.6.0, batik-rasterizer-ext.version=1.9.1, os.arch=amd64, trakem2_tps.version=1.1.4, license.copyrightOwners=N/A, env.DESKTOP_SESSION=/usr/share/xsessions/plasma, jetty-security.version=9.4.9.v20180320, Correct_3D_Drift.version=1.0.3, Stitching_.version=3.1.5, env.GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/hanslovskyp/.gtkrc-2.0:/home/hanslovskyp/.config/gtkrc-2.0, maven-site-plugin.version=3.6, Archipelago_Plugins.version=0.5.4, batik-squiggle-ext.version=1.9.1, awt.toolkit=sun.awt.X11.XToolkit, jetty-proxy.version=9.4.9.v20180320, Time_Lapse.version=2.1.0, romio.version=5.4.5-ice36-b83, imagej-ops.version=0.40.0, sanitizedVersion=0.1.0, Anisotropic_Diffusion_2D.version=2.0.1, scijava-cache.version=0.1.2, env.JAVA_HOME=/usr/lib/jvm/java-9-openjdk/, OMEVisual.version=1.1.1, java.vm.compressedOopsMode=32-bit, scijava-java3d.version=0.1.0, imagej1.version=1.52a, license-maven-plugin.version=1.12, imglib2-roi.version=0.5.1, QuickPALM.version=1.1.2, LocalThickness_.version=4.0.2, FlowJ_.version=1.29.3, fiji-lib.version=2.1.2, env.WINDOWID=33554438, batik-awt-util.version=1.9.1, imglib2-algorithm-fft.version=0.2.0, env.LOGNAME=hanslovskyp, batik-squiggle.version=1.9.1, env.XDG_VTNR=1, env.XCURSOR_THEME=Breeze_Snow, license.projectName=New Era Painting and annotation tool, rsyntaxtextarea.version=2.6.1, sun.os.patch.level=unknown, RATS.version=2.0.2, jetty-client.version=9.4.9.v20180320, Auto_Threshold.version=1.17.1, logback-classic.version=1.2.3, mines-jtk.version=20151125, velocity.version=1.7, env.MAVEN_OPTS= -Xmx512m, env.ZPLUG_ERROR_LOG=/home/hanslovskyp/.zplug/.error_log, scijava-io-http.version=0.1.1, main-class=, bUnwarpJ.version=2.6.9, formats-gpl.version=5.8.2, batik-i18n.version=1.9.1, imagej-usage.version=0.4.1, imglib2-algorithm-gpl.version=0.2.3, maven.conf=/opt/maven/conf, jgraphx.version=3.4.1.3, Samples.version=2.0.2, VIB_.version=3.0.2, env.ECLIPSE_HOME=/home/hanslovskyp/.eclipse, sun.java.launcher=SUN_STANDARD, bigdataviewer-server.version=2.1.0, scijava-plugins-commands.version=0.2.3, extra-enforcer-rules.version=1.0-beta-7, env.KONSOLE_DBUS_SESSION=/Sessions/19, env.GEOMETRY_COLOR_VIRTUALENV=green, maven-resources-plugin.version=3.0.2, scripting-beanshell.version=0.3.3, VIB-lib.version=2.2.0, Reconstruct_Reader.version=2.0.3, slf4j-api.version=1.7.25, imagej-scripting.version=0.8.1, jetty.version=9.4.9.v20180320, mpicbg.version=1.2.0, batik-svggen.version=1.9.1, env.SITE_PACKAGES=/home/hanslovskyp/local/lib/python3.6/site-packages, op-finder.version=0.1.3, KymographBuilder.version=2.0.0, jetty-servlet.version=9.4.9.v20180320, kotlin-stdlib.version=1.2.40, AnalyzeSkeleton_.version=3.2.1, jetty-annotations.version=9.4.9.v20180320, jogl-all-main.version=2.3.2, formats-api.version=5.8.2, Fiji_3D_Blob_Segmentation.version=3.0.1, scifio-cli.version=0.3.4, env.ENHANCD_DOT_SHOW_FULLPATH=0, sun.cpu.isalist=, trove4j.version=3.0.3, allowedDuplicateClasses=org.hibernate.stat.ConcurrentStatisticsImpl,org.junit.runner.Runner, sun.arch.data.model=64, ij1-patcher.version=0.12.8, jython-shaded.version=2.7.1, BalloonSegmentation.version=3.0.1, env.GOPATH=/home/hanslovskyp/local/go, scijava.jvm.build.version=1.8.0-101, xmlgraphics-commons.version=2.2, maven-jar-plugin.version=2.6, nexus-staging-maven-plugin.version=1.6.7, maven-compiler-plugin.version=3.7.0, java.specification.vendor=Oracle Corporation, Volume_Viewer.version=2.01.2, scijava.groupIds=org.scijava,net.imagej,net.imglib2,io.scif,sc.fiji, Image_Expression_Parser.version=3.0.1, Vaa3d_Writer.version=1.0.2, jetty-http.version=9.4.9.v20180320, wagon-webdav-jackrabbit.version=1.0, Cell_Counter.version=2.2.2, z_spacing.version=1.0.3, scifio.version=0.35.0, releaseProfiles=sonatype-oss-release, batik-codec.version=1.9.1, ome-poi.version=5.3.2, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:, file.encoding=UTF-8, Sholl_Analysis.version=3.7.3, env.SHLVL=2, env.XDG_SESSION_DESKTOP=KDE, Arrow_.version=2.0.2, multiview-reconstruction.version=0.2.2, env.ENHANCD_HOME_ARG=, trakem2-transform.version=1.0.1, classworlds.conf=/opt/maven/bin/m2.conf, imagej-plugins-tools.version=0.3.1, blockmatching.version=2.1.2, sun.io.unicode.encoding=UnicodeLittle, joda-time.version=2.9.9, model-psql.version=5.4.5-ice36-b83, ToAST_.version=25.0.2, imagej-notebook.version=0.2.3, TopoJ.version=2.0.1, bio-formats.version=5.8.2, multiview-simulation.version=0.1.0, maven-plugin-plugin.version=3.5, buildNumber=0e576785f8de7023c1615d7c9ef9da4ce802b6b1, batik-constants.version=1.9.1, Arrow.version=2.0.2, env.DISPLAY=:0, scijava-ui-awt.version=0.1.6, ImageJ_3D_Objects_Counter.version=2.0.1, env.EDITOR=emacsclient -c, SplineDeformationGenerator.version=2.0.2, batik-parser.version=1.9.1, jetty-plus.version=9.4.9.v20180320, Samples_.version=2.0.2, fiji-compat.version=2.0.3, scripting-matlab.version=0.5.2, QuickPALM_.version=1.1.2, env.ZSH=/home/hanslovskyp/.zplug/repos/robbyrussell/oh-my-zsh, maven-enforcer-plugin.version=1.4.1, j3dcore.version=1.6.0-scijava-2, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, imagej-plugins-uploader-webdav.version=0.2.2, jitk-tps.version=3.0.0, slf4j-nop.version=1.7.25, autocomplete.version=2.6.1, path.separator=:, env.ZPLUG_THREADS=16, env.ZPLUG_USE_CACHE=true, scijava-config.version=2.0.2, batik-script.version=1.9.1, imagej-common.version=0.25.0, omero.version=5.4.5-ice36-b83, nar-maven-plugin.version=3.5.1, miglayout.version=3.7.4, jai-core.version=1.1.3, env.ZPLUG_CACHE_DIR=/home/hanslovskyp/.zplug/cache, env.SHELL_SESSION_ID=75fcd8d4fe1f4d60b9338ed25dbf383d, maven.multiModuleProjectDirectory=/home/hanslovskyp/git/paintera, batik-slideshow.version=1.9.1, CPU_Meter.version=2.0.1, package-name=, Multi_Kymograph.version=3.0.1, env.MAVEN_PROJECTBASEDIR=/home/hanslovskyp/git/paintera, scijava-common.version=2.71.1, Descriptor_based_registration.version=2.1.2, imagej-mesh.version=0.3.0, Dichromacy.version=2.1.1, env.KDE_SESSION_VERSION=5, jetty-util-ajax.version=9.4.9.v20180320, env.GTK_RC_FILES=/etc/gtk/gtkrc:/home/hanslovskyp/.gtkrc:/home/hanslovskyp/.config/gtkrc, AnalyzeSkeleton.version=3.2.1, SPIM_Registration.version=5.0.18, batik-ttf2svg.version=1.9.1, scijava-plugins-platforms.version=0.3.1, env.ENHANCD_HYPHEN_ARG=-, VIB.version=3.0.2, env.ENHANCD_DOT_ARG=.., ToAST.version=25.0.2, slf4j.version=1.7.25, itextpdf.version=5.5.13, junit-benchmarks.version=0.7.4-scijava, env.LESS=-RS#3NM~g, scijava-ui-swing.version=0.10.0, parsington.version=1.0.1, jetty-continuation.version=9.4.9.v20180320, MorphoLibJ.version=1.3.3, env.ENHANCD_DIR=/home/hanslovskyp/.enhancd, dsl.version=5.4.5-ice36-b83, env.GEOMETRY_VIRTUALENV_CONDA_SEPARATOR=~~, ojalgo.version=43.0, jhdf5.version=14.12.6, mpicbg_.version=1.2.0, user.name=hanslovskyp, rendering.version=5.4.5-ice36-b83, ImageJ_3D_Viewer.version=4.0.2, Volume_Calculator.version=2.0.2, batik-xml.version=1.9.1, env._ZPLUG_CONFIG_SUBSHELL=:, env.XCURSOR_SIZE=24, env.XDG_RUNTIME_DIR=/run/user/52164, project.reporting.outputEncoding=UTF-8, jetty-util.version=9.4.9.v20180320, env.FPATH=/home/hanslovskyp/.zplug/autoload:/home/hanslovskyp/.zplug/misc/completions:/home/hanslovskyp/.zplug/base/sources:/home/hanslovskyp/.zplug/base/utils:/home/hanslovskyp/.zplug/base/job:/home/hanslovskyp/.zplug/base/log:/home/hanslovskyp/.zplug/base/io:/home/hanslovskyp/.zplug/base/core:/home/hanslovskyp/.zplug/base/base:/home/hanslovskyp/.zplug/autoload/commands:/home/hanslovskyp/.zplug/autoload/options:/home/hanslovskyp/.zplug/autoload/tags:/usr/share/grml/zsh/functions:/usr/share/grml/zsh/completion:/usr/local/share/zsh/site-functions:/usr/share/zsh/site-functions:/usr/share/zsh/functions/Calendar:/usr/share/zsh/functions/Chpwd:/usr/share/zsh/functions/Completion:/usr/share/zsh/functions/Completion/Base:/usr/share/zsh/functions/Completion/Linux:/usr/share/zsh/functions/Completion/Unix:/usr/share/zsh/functions/Completion/X:/usr/share/zsh/functions/Completion/Zsh:/usr/share/zsh/functions/Exceptions:/usr/share/zsh/functions/Math:/usr/share/zsh/functions/MIME:/usr/share/zsh/functions/Misc:/usr/share/zsh/functions/Newuser:/usr/share/zsh/functions/Prompts:/usr/share/zsh/functions/TCP:/usr/share/zsh/functions/VCS_Info:/usr/share/zsh/functions/VCS_Info/Backends:/usr/share/zsh/functions/Zftp:/usr/share/zsh/functions/Zle:/home/hanslovskyp/.zplug/repos/zsh-users/zaw/functions:/home/hanslovskyp/.zplug/repos/zsh-users/zsh-completions/src, env.XDG_SESSION_TYPE=x11, jep.version=2.4.2, env.OLDPWD=/home/hanslovskyp/git/paintera, batik-gvt.version=1.9.1, env.ENHANCD_DISABLE_DOT=0, Lasso_and_Blow_Tool.version=2.0.2, MTrack2.version=2.0.1, java.vm.vendor=Oracle Corporation, maven-javadoc-plugin.version=2.10.4, VectorString.version=2.0.1, env.ENHANCD_FILTER=fzy:fzf-tmux:fzf, vecmath.version=1.6.0-scijava-2, commons-collections.version=3.2.2, LocalThickness.version=4.0.2, jetty-rewrite.version=9.4.9.v20180320, env.GIT_REPO_DIR=/home/hanslovskyp/git, sun.cpu.endian=little, versions-maven-plugin.version=2.3, user.language=en, CorrectBleach.version=2.0.2, env._ZPLUG_OHMYZSH=robbyrussell/oh-my-zsh, joal-main.version=2.3.2, ui-behaviour.version=1.7.3, imglib2.version=5.1.0, jsch.version=0.1.54, mapdb.version=1.0.3, imagej-omero.version=0.4.1, env.GEOMETRY_COLOR_CONDA=red, env.ZPLUG_HOME=/home/hanslovskyp/.zplug, jetty-jspc-maven-plugin.version=9.4.9.v20180320, env.GS_LIB=/home/hanslovskyp/.fonts, native-lib-loader.version=2.2.0, cleargl.version=2.1.5, scijava.jvm.version=1.8, Simple_Neurite_Tracer.version=3.1.6, imglib2-realtransform.version=2.0.0, batik.version=1.9.1, java.vendor.url.bug=http://bugreport.java.com/bugreport/, env.PERIOD=30, scifio-hdf5.version=0.1.2, jocl-main.version=2.3.2, opencsv.version=3.9, scmBranch=master, java.vm.version=9.0.4+11, env.ENHANCD_DISABLE_HOME=0, scijava-grab.version=0.1.0, env.QT_SELECT=4, imagej-updater.version=0.9.0} [INFO] Using 'UTF-8' encoding to copy filtered resources. [DEBUG] resource with targetPath null directory /home/hanslovskyp/git/paintera/src/main/resources excludes [] includes [] [DEBUG] ignoreDelta true [INFO] Copying 7 resources [DEBUG] Copying file dvid-flyem-grayscale-bodies.xml [DEBUG] file dvid-flyem-grayscale-bodies.xml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/dvid-flyem-grayscale-bodies.xml to /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-grayscale-bodies.xml [DEBUG] Copying file bigcat-broker.json [DEBUG] file bigcat-broker.json has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/bigcat-broker.json to /home/hanslovskyp/git/paintera/target/classes/bigcat-broker.json [DEBUG] Copying file dvid-flyem-superpixels.xml [DEBUG] file dvid-flyem-superpixels.xml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/dvid-flyem-superpixels.xml to /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-superpixels.xml [DEBUG] Copying file bigcat-keyconfig.yaml [DEBUG] file bigcat-keyconfig.yaml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/bigcat-keyconfig.yaml to /home/hanslovskyp/git/paintera/target/classes/bigcat-keyconfig.yaml [DEBUG] Copying file dvid-flyem-graytiles.xml [DEBUG] file dvid-flyem-graytiles.xml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/dvid-flyem-graytiles.xml to /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-graytiles.xml [DEBUG] Copying file dvid-flyem-grayscale.xml [DEBUG] file dvid-flyem-grayscale.xml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/dvid-flyem-grayscale.xml to /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-grayscale.xml [DEBUG] Copying file dvid-flyem-bodies.xml [DEBUG] file dvid-flyem-bodies.xml has a filtered file extension [DEBUG] copy /home/hanslovskyp/git/paintera/src/main/resources/dvid-flyem-bodies.xml to /home/hanslovskyp/git/paintera/target/classes/dvid-flyem-bodies.xml [DEBUG] no use filter components [INFO] [INFO] --- maven-compiler-plugin:3.7.0:compile (default-compile) @ paintera --- [DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=106648, ConflictMarker.markTime=90165, ConflictMarker.nodeCount=118, ConflictIdSorter.graphTime=49098, ConflictIdSorter.topsortTime=51613, ConflictIdSorter.conflictIdCount=45, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=800869, ConflictResolver.conflictItemCount=72, DefaultDependencyCollector.collectTime=21151472, DefaultDependencyCollector.transformTime=1129192} [DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0: [DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile [DEBUG] org.apache.maven:maven-model:jar:3.0:compile [DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile [DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile [DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile [DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile [DEBUG] org.apache.maven:maven-core:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings:jar:3.0:compile [DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile [DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile [DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime [DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile [DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile [DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile [DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile [DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile [DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile [DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile [DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.1.0:compile [DEBUG] commons-io:commons-io:jar:2.5:compile [DEBUG] org.apache.maven.shared:maven-shared-incremental:jar:1.1:compile [DEBUG] org.codehaus.plexus:plexus-java:jar:0.9.2:compile [DEBUG] org.ow2.asm:asm:jar:6.0_BETA:compile [DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M7:compile [DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2:compile [DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2:runtime [DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Imported: < project>org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT [DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0 [DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:3.7.0 [DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2 [DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7 [DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4 [DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7 [DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14 [DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6 [DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3 [DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4 [DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.1.0 [DEBUG] Included: commons-io:commons-io:jar:2.5 [DEBUG] Included: org.apache.maven.shared:maven-shared-incremental:jar:1.1 [DEBUG] Included: org.codehaus.plexus:plexus-java:jar:0.9.2 [DEBUG] Included: org.ow2.asm:asm:jar:6.0_BETA [DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M7 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:2.8.2 [DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:2.8.2 [DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:3.7.0, parent: jdk.internal.loader.ClassLoaders$AppClassLoader@1b9e1916] [DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile' with basic configurator --> [DEBUG] (f) basedir = /home/hanslovskyp/git/paintera [DEBUG] (f) buildDirectory = /home/hanslovskyp/git/paintera/target [DEBUG] (f) compilePath = [/home/hanslovskyp/git/paintera/target/classes, /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar, /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-core/5.0.0/bigdataviewer-core-5.0.0.jar, /home/hanslovskyp/.m2/repository/sc/fiji/spim_data/2.2.1/spim_data-2.2.1.jar, /home/hanslovskyp/.m2/repository/cisd/jhdf5/14.12.6/jhdf5-14.12.6.jar, /home/hanslovskyp/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar, /home/hanslovskyp/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar, /home/hanslovskyp/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar, /home/hanslovskyp/.m2/repository/org/scijava/ui-behaviour/1.7.3/ui-behaviour-1.7.3.jar, /home/hanslovskyp/.m2/repository/org/yaml/snakeyaml/1.13/snakeyaml-1.13.jar, /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.3/gson-2.8.3.jar, /home/hanslovskyp/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-algorithm/0.9.0/imglib2-algorithm-0.9.0.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-roi/0.5.1/imglib2-roi-0.5.1.jar, /home/hanslovskyp/.m2/repository/gov/nist/math/jama/1.0.3/jama-1.0.3.jar, /home/hanslovskyp/.m2/repository/org/ojalgo/ojalgo/43.0/ojalgo-43.0.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-ui/2.0.0/imglib2-ui-2.0.0.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-realtransform/2.0.0/imglib2-realtransform-2.0.0.jar, /home/hanslovskyp/.m2/repository/jitk/jitk-tps/3.0.0/jitk-tps-3.0.0.jar, /home/hanslovskyp/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.24/ejml-0.24.jar, /home/hanslovskyp/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar, /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-vistools/1.0.0-beta-11/bigdataviewer-vistools-1.0.0-beta-11.jar, /home/hanslovskyp/.m2/repository/commons-collections/commons-collections/3.2.2/commons-collections-3.2.2.jar, /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar, /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-simple/1.7.25/slf4j-simple-1.7.25.jar, /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-cache/1.0.0-beta-8/imglib2-cache-1.0.0-beta-8.jar, /home/hanslovskyp/.m2/repository/com/github/ben-manes/caffeine/caffeine/2.4.0/caffeine-2.4.0.jar, /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar, /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar, /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar, /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar, /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.71.1/scijava-common-2.71.1.jar, /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar, /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar, /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-hdf5/1.0.2/n5-hdf5-1.0.2.jar, /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-imglib2/3.0.0/n5-imglib2-3.0.0.jar, /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-google-cloud/2.3.1/n5-google-cloud-2.3.1.jar, /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-storage/1.20.0/google-cloud-storage-1.20.0.jar, /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core/1.20.0/google-cloud-core-1.20.0.jar, /home/hanslovskyp/.m2/repository/joda-time/joda-time/2.9.9/joda-time-2.9.9.jar, /home/hanslovskyp/.m2/repository/com/google/code/findbugs/jsr305/3.0.1/jsr305-3.0.1.jar, /home/hanslovskyp/.m2/repository/com/google/api/api-common/1.4.0/api-common-1.4.0.jar, /home/hanslovskyp/.m2/repository/com/google/api/gax/1.19.0/gax-1.19.0.jar, /home/hanslovskyp/.m2/repository/org/threeten/threetenbp/1.3.3/threetenbp-1.3.3.jar, /home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java-util/3.5.1/protobuf-java-util-3.5.1.jar, /home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java/3.5.1/protobuf-java-3.5.1.jar, /home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-common-protos/1.2.0/proto-google-common-protos-1.2.0.jar, /home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-iam-v1/0.3.0/proto-google-iam-v1-0.3.0.jar, /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core-http/1.20.0/google-cloud-core-http-1.20.0.jar, /home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-credentials/0.9.0/google-auth-library-credentials-0.9.0.jar, /home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-oauth2-http/0.9.0/google-auth-library-oauth2-http-0.9.0.jar, /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client/1.23.0/google-oauth-client-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-appengine/1.23.0/google-http-client-appengine-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson/1.23.0/google-http-client-jackson-1.23.0.jar, /home/hanslovskyp/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.11/jackson-core-asl-1.9.11.jar, /home/hanslovskyp/.m2/repository/com/google/api/gax-httpjson/0.36.0/gax-httpjson-0.36.0.jar, /home/hanslovskyp/.m2/repository/io/opencensus/opencensus-api/0.11.1/opencensus-api-0.11.1.jar, /home/hanslovskyp/.m2/repository/com/google/errorprone/error_prone_annotations/2.2.0/error_prone_annotations-2.2.0.jar, /home/hanslovskyp/.m2/repository/io/grpc/grpc-context/1.9.0/grpc-context-1.9.0.jar, /home/hanslovskyp/.m2/repository/io/opencensus/opencensus-contrib-http-util/0.11.1/opencensus-contrib-http-util-0.11.1.jar, /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-storage/v1-rev114-1.23.0/google-api-services-storage-v1-rev114-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-resourcemanager/0.38.0-alpha/google-cloud-resourcemanager-0.38.0-alpha.jar, /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-cloudresourcemanager/v1-rev470-1.23.0/google-api-services-cloudresourcemanager-v1-rev470-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-oauth2/v2-rev134-1.23.0/google-api-services-oauth2-v2-rev134-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/api-client/google-api-client/1.23.0/google-api-client-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson2/1.23.0/google-http-client-jackson2-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client/1.23.0/google-http-client-1.23.0.jar, /home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpclient/4.0.1/httpclient-4.0.1.jar, /home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpcore/4.0.1/httpcore-4.0.1.jar, /home/hanslovskyp/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar, /home/hanslovskyp/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.1.3/jackson-core-2.1.3.jar, /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-jetty/1.23.0/google-oauth-client-jetty-1.23.0.jar, /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-java6/1.23.0/google-oauth-client-java6-1.23.0.jar, /home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty/6.1.26/jetty-6.1.26.jar, /home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty-util/6.1.26/jetty-util-6.1.26.jar, /home/hanslovskyp/.m2/repository/org/mortbay/jetty/servlet-api/2.5-20081211/servlet-api-2.5-20081211.jar, /home/hanslovskyp/.m2/repository/org/controlsfx/controlsfx/8.40.14/controlsfx-8.40.14.jar, /home/hanslovskyp/.m2/repository/info/picocli/picocli/3.0.0-beta-2/picocli-3.0.0-beta-2.jar, /home/hanslovskyp/.m2/repository/org/clapper/javautil/3.2.0/javautil-3.2.0.jar, /home/hanslovskyp/.m2/repository/javax/activation/activation/1.1/activation-1.1.jar, /home/hanslovskyp/.m2/repository/javax/mail/mail/1.4.3/mail-1.4.3.jar, /home/hanslovskyp/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar, /home/hanslovskyp/.m2/repository/asm/asm-commons/3.3.1/asm-commons-3.3.1.jar, /home/hanslovskyp/.m2/repository/asm/asm-tree/3.3.1/asm-tree-3.3.1.jar, /home/hanslovskyp/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar, /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-jdk14/1.7.25/slf4j-jdk14-1.7.25.jar, /home/hanslovskyp/.m2/repository/com/google/guava/guava/21.0/guava-21.0.jar] [DEBUG] (f) compileSourceRoots = [/home/hanslovskyp/git/paintera/src/main/java] [DEBUG] (f) compilerId = javac [DEBUG] (f) debug = true [DEBUG] (f) encoding = UTF-8 [DEBUG] (f) failOnError = true [DEBUG] (f) failOnWarning = false [DEBUG] (f) forceJavacCompilerUse = false [DEBUG] (f) fork = false [DEBUG] (f) generatedSourcesDirectory = /home/hanslovskyp/git/paintera/target/generated-sources/annotations [DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile {execution: default-compile} [DEBUG] (f) optimize = false [DEBUG] (f) outputDirectory = /home/hanslovskyp/git/paintera/target/classes [DEBUG] (f) parameters = false [DEBUG] (f) project = MavenProject: org.janelia.saalfeldlab:paintera:0.1.0-SNAPSHOT @ /home/hanslovskyp/git/paintera/pom.xml [DEBUG] (f) projectArtifact = org.janelia.saalfeldlab:paintera:jar:0.1.0-SNAPSHOT [DEBUG] (f) session = org.apache.maven.execution.MavenSession@37b52340 [DEBUG] (f) showDeprecation = false [DEBUG] (f) showWarnings = false [DEBUG] (f) skipMultiThreadWarning = false [DEBUG] (f) source = 1.8 [DEBUG] (f) staleMillis = 0 [DEBUG] (f) target = 1.8 [DEBUG] (f) useIncrementalCompilation = false [DEBUG] (f) verbose = false [DEBUG] -- end configuration -- [DEBUG] Using compiler 'javac'. [DEBUG] Adding /home/hanslovskyp/git/paintera/target/generated-sources/annotations to compile source roots: /home/hanslovskyp/git/paintera/src/main/java [DEBUG] New compile source roots: /home/hanslovskyp/git/paintera/src/main/java /home/hanslovskyp/git/paintera/target/generated-sources/annotations [DEBUG] CompilerReuseStrategy: reuseCreated [DEBUG] useIncrementalCompilation disabled [DEBUG] Classpath: [DEBUG] /home/hanslovskyp/git/paintera/target/classes [DEBUG] /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-core/5.0.0/bigdataviewer-core-5.0.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/sc/fiji/spim_data/2.2.1/spim_data-2.2.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/cisd/jhdf5/14.12.6/jhdf5-14.12.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/ui-behaviour/1.7.3/ui-behaviour-1.7.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/yaml/snakeyaml/1.13/snakeyaml-1.13.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.3/gson-2.8.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-algorithm/0.9.0/imglib2-algorithm-0.9.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-roi/0.5.1/imglib2-roi-0.5.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/gov/nist/math/jama/1.0.3/jama-1.0.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/ojalgo/ojalgo/43.0/ojalgo-43.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-ui/2.0.0/imglib2-ui-2.0.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-realtransform/2.0.0/imglib2-realtransform-2.0.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/jitk/jitk-tps/3.0.0/jitk-tps-3.0.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.24/ejml-0.24.jar [DEBUG] /home/hanslovskyp/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar [DEBUG] /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-vistools/1.0.0-beta-11/bigdataviewer-vistools-1.0.0-beta-11.jar [DEBUG] /home/hanslovskyp/.m2/repository/commons-collections/commons-collections/3.2.2/commons-collections-3.2.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-simple/1.7.25/slf4j-simple-1.7.25.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-cache/1.0.0-beta-8/imglib2-cache-1.0.0-beta-8.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/github/ben-manes/caffeine/caffeine/2.4.0/caffeine-2.4.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar [DEBUG] /home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.71.1/scijava-common-2.71.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-hdf5/1.0.2/n5-hdf5-1.0.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-imglib2/3.0.0/n5-imglib2-3.0.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-google-cloud/2.3.1/n5-google-cloud-2.3.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-storage/1.20.0/google-cloud-storage-1.20.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core/1.20.0/google-cloud-core-1.20.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/joda-time/joda-time/2.9.9/joda-time-2.9.9.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/code/findbugs/jsr305/3.0.1/jsr305-3.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api/api-common/1.4.0/api-common-1.4.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api/gax/1.19.0/gax-1.19.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/threeten/threetenbp/1.3.3/threetenbp-1.3.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java-util/3.5.1/protobuf-java-util-3.5.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java/3.5.1/protobuf-java-3.5.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-common-protos/1.2.0/proto-google-common-protos-1.2.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-iam-v1/0.3.0/proto-google-iam-v1-0.3.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core-http/1.20.0/google-cloud-core-http-1.20.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-credentials/0.9.0/google-auth-library-credentials-0.9.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-oauth2-http/0.9.0/google-auth-library-oauth2-http-0.9.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client/1.23.0/google-oauth-client-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-appengine/1.23.0/google-http-client-appengine-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson/1.23.0/google-http-client-jackson-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.11/jackson-core-asl-1.9.11.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api/gax-httpjson/0.36.0/gax-httpjson-0.36.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/io/opencensus/opencensus-api/0.11.1/opencensus-api-0.11.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/errorprone/error_prone_annotations/2.2.0/error_prone_annotations-2.2.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/io/grpc/grpc-context/1.9.0/grpc-context-1.9.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/io/opencensus/opencensus-contrib-http-util/0.11.1/opencensus-contrib-http-util-0.11.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-storage/v1-rev114-1.23.0/google-api-services-storage-v1-rev114-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-resourcemanager/0.38.0-alpha/google-cloud-resourcemanager-0.38.0-alpha.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-cloudresourcemanager/v1-rev470-1.23.0/google-api-services-cloudresourcemanager-v1-rev470-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-oauth2/v2-rev134-1.23.0/google-api-services-oauth2-v2-rev134-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/api-client/google-api-client/1.23.0/google-api-client-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson2/1.23.0/google-http-client-jackson2-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client/1.23.0/google-http-client-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpclient/4.0.1/httpclient-4.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpcore/4.0.1/httpcore-4.0.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.1.3/jackson-core-2.1.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-jetty/1.23.0/google-oauth-client-jetty-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-java6/1.23.0/google-oauth-client-java6-1.23.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty/6.1.26/jetty-6.1.26.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty-util/6.1.26/jetty-util-6.1.26.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/mortbay/jetty/servlet-api/2.5-20081211/servlet-api-2.5-20081211.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/controlsfx/controlsfx/8.40.14/controlsfx-8.40.14.jar [DEBUG] /home/hanslovskyp/.m2/repository/info/picocli/picocli/3.0.0-beta-2/picocli-3.0.0-beta-2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/clapper/javautil/3.2.0/javautil-3.2.0.jar [DEBUG] /home/hanslovskyp/.m2/repository/javax/activation/activation/1.1/activation-1.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/javax/mail/mail/1.4.3/mail-1.4.3.jar [DEBUG] /home/hanslovskyp/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/asm/asm-commons/3.3.1/asm-commons-3.3.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/asm/asm-tree/3.3.1/asm-tree-3.3.1.jar [DEBUG] /home/hanslovskyp/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar [DEBUG] /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-jdk14/1.7.25/slf4j-jdk14-1.7.25.jar [DEBUG] /home/hanslovskyp/.m2/repository/com/google/guava/guava/21.0/guava-21.0.jar [DEBUG] Source roots: [DEBUG] /home/hanslovskyp/git/paintera/src/main/java [DEBUG] /home/hanslovskyp/git/paintera/target/generated-sources/annotations [DEBUG] Command line options: [DEBUG] -d /home/hanslovskyp/git/paintera/target/classes -classpath /home/hanslovskyp/git/paintera/target/classes:/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar:/home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-core/5.0.0/bigdataviewer-core-5.0.0.jar:/home/hanslovskyp/.m2/repository/sc/fiji/spim_data/2.2.1/spim_data-2.2.1.jar:/home/hanslovskyp/.m2/repository/cisd/jhdf5/14.12.6/jhdf5-14.12.6.jar:/home/hanslovskyp/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar:/home/hanslovskyp/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar:/home/hanslovskyp/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar:/home/hanslovskyp/.m2/repository/org/scijava/ui-behaviour/1.7.3/ui-behaviour-1.7.3.jar:/home/hanslovskyp/.m2/repository/org/yaml/snakeyaml/1.13/snakeyaml-1.13.jar:/home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.3/gson-2.8.3.jar:/home/hanslovskyp/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2-algorithm/0.9.0/imglib2-algorithm-0.9.0.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2-roi/0.5.1/imglib2-roi-0.5.1.jar:/home/hanslovskyp/.m2/repository/gov/nist/math/jama/1.0.3/jama-1.0.3.jar:/home/hanslovskyp/.m2/repository/org/ojalgo/ojalgo/43.0/ojalgo-43.0.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2-ui/2.0.0/imglib2-ui-2.0.0.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2-realtransform/2.0.0/imglib2-realtransform-2.0.0.jar:/home/hanslovskyp/.m2/repository/jitk/jitk-tps/3.0.0/jitk-tps-3.0.0.jar:/home/hanslovskyp/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.24/ejml-0.24.jar:/home/hanslovskyp/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar:/home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-vistools/1.0.0-beta-11/bigdataviewer-vistools-1.0.0-beta-11.jar:/home/hanslovskyp/.m2/repository/commons-collections/commons-collections/3.2.2/commons-collections-3.2.2.jar:/home/hanslovskyp/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar:/home/hanslovskyp/.m2/repository/org/slf4j/slf4j-simple/1.7.25/slf4j-simple-1.7.25.jar:/home/hanslovskyp/.m2/repository/net/imglib2/imglib2-cache/1.0.0-beta-8/imglib2-cache-1.0.0-beta-8.jar:/home/hanslovskyp/.m2/repository/com/github/ben-manes/caffeine/caffeine/2.4.0/caffeine-2.4.0.jar:/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar:/home/hanslovskyp/.m2/repository/org/tukaani/xz/1.6/xz-1.6.jar:/home/hanslovskyp/.m2/repository/org/apache/commons/commons-compress/1.14/commons-compress-1.14.jar:/home/hanslovskyp/.m2/repository/net/jpountz/lz4/lz4/1.3.0/lz4-1.3.0.jar:/home/hanslovskyp/.m2/repository/org/scijava/scijava-common/2.71.1/scijava-common-2.71.1.jar:/home/hanslovskyp/.m2/repository/org/scijava/parsington/1.0.1/parsington-1.0.1.jar:/home/hanslovskyp/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-hdf5/1.0.2/n5-hdf5-1.0.2.jar:/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-imglib2/3.0.0/n5-imglib2-3.0.0.jar:/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-google-cloud/2.3.1/n5-google-cloud-2.3.1.jar:/home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-storage/1.20.0/google-cloud-storage-1.20.0.jar:/home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core/1.20.0/google-cloud-core-1.20.0.jar:/home/hanslovskyp/.m2/repository/joda-time/joda-time/2.9.9/joda-time-2.9.9.jar:/home/hanslovskyp/.m2/repository/com/google/code/findbugs/jsr305/3.0.1/jsr305-3.0.1.jar:/home/hanslovskyp/.m2/repository/com/google/api/api-common/1.4.0/api-common-1.4.0.jar:/home/hanslovskyp/.m2/repository/com/google/api/gax/1.19.0/gax-1.19.0.jar:/home/hanslovskyp/.m2/repository/org/threeten/threetenbp/1.3.3/threetenbp-1.3.3.jar:/home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java-util/3.5.1/protobuf-java-util-3.5.1.jar:/home/hanslovskyp/.m2/repository/com/google/protobuf/protobuf-java/3.5.1/protobuf-java-3.5.1.jar:/home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-common-protos/1.2.0/proto-google-common-protos-1.2.0.jar:/home/hanslovskyp/.m2/repository/com/google/api/grpc/proto-google-iam-v1/0.3.0/proto-google-iam-v1-0.3.0.jar:/home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-core-http/1.20.0/google-cloud-core-http-1.20.0.jar:/home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-credentials/0.9.0/google-auth-library-credentials-0.9.0.jar:/home/hanslovskyp/.m2/repository/com/google/auth/google-auth-library-oauth2-http/0.9.0/google-auth-library-oauth2-http-0.9.0.jar:/home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client/1.23.0/google-oauth-client-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-appengine/1.23.0/google-http-client-appengine-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson/1.23.0/google-http-client-jackson-1.23.0.jar:/home/hanslovskyp/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.9.11/jackson-core-asl-1.9.11.jar:/home/hanslovskyp/.m2/repository/com/google/api/gax-httpjson/0.36.0/gax-httpjson-0.36.0.jar:/home/hanslovskyp/.m2/repository/io/opencensus/opencensus-api/0.11.1/opencensus-api-0.11.1.jar:/home/hanslovskyp/.m2/repository/com/google/errorprone/error_prone_annotations/2.2.0/error_prone_annotations-2.2.0.jar:/home/hanslovskyp/.m2/repository/io/grpc/grpc-context/1.9.0/grpc-context-1.9.0.jar:/home/hanslovskyp/.m2/repository/io/opencensus/opencensus-contrib-http-util/0.11.1/opencensus-contrib-http-util-0.11.1.jar:/home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-storage/v1-rev114-1.23.0/google-api-services-storage-v1-rev114-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-resourcemanager/0.38.0-alpha/google-cloud-resourcemanager-0.38.0-alpha.jar:/home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-cloudresourcemanager/v1-rev470-1.23.0/google-api-services-cloudresourcemanager-v1-rev470-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/apis/google-api-services-oauth2/v2-rev134-1.23.0/google-api-services-oauth2-v2-rev134-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/api-client/google-api-client/1.23.0/google-api-client-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client-jackson2/1.23.0/google-http-client-jackson2-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client/1.23.0/google-http-client-1.23.0.jar:/home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpclient/4.0.1/httpclient-4.0.1.jar:/home/hanslovskyp/.m2/repository/org/apache/httpcomponents/httpcore/4.0.1/httpcore-4.0.1.jar:/home/hanslovskyp/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar:/home/hanslovskyp/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.1.3/jackson-core-2.1.3.jar:/home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-jetty/1.23.0/google-oauth-client-jetty-1.23.0.jar:/home/hanslovskyp/.m2/repository/com/google/oauth-client/google-oauth-client-java6/1.23.0/google-oauth-client-java6-1.23.0.jar:/home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty/6.1.26/jetty-6.1.26.jar:/home/hanslovskyp/.m2/repository/org/mortbay/jetty/jetty-util/6.1.26/jetty-util-6.1.26.jar:/home/hanslovskyp/.m2/repository/org/mortbay/jetty/servlet-api/2.5-20081211/servlet-api-2.5-20081211.jar:/home/hanslovskyp/.m2/repository/org/controlsfx/controlsfx/8.40.14/controlsfx-8.40.14.jar:/home/hanslovskyp/.m2/repository/info/picocli/picocli/3.0.0-beta-2/picocli-3.0.0-beta-2.jar:/home/hanslovskyp/.m2/repository/org/clapper/javautil/3.2.0/javautil-3.2.0.jar:/home/hanslovskyp/.m2/repository/javax/activation/activation/1.1/activation-1.1.jar:/home/hanslovskyp/.m2/repository/javax/mail/mail/1.4.3/mail-1.4.3.jar:/home/hanslovskyp/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar:/home/hanslovskyp/.m2/repository/asm/asm-commons/3.3.1/asm-commons-3.3.1.jar:/home/hanslovskyp/.m2/repository/asm/asm-tree/3.3.1/asm-tree-3.3.1.jar:/home/hanslovskyp/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar:/home/hanslovskyp/.m2/repository/org/slf4j/slf4j-jdk14/1.7.25/slf4j-jdk14-1.7.25.jar:/home/hanslovskyp/.m2/repository/com/google/guava/guava/21.0/guava-21.0.jar: -sourcepath /home/hanslovskyp/git/paintera/src/main/java:/home/hanslovskyp/git/paintera/target/generated-sources/annotations: -s /home/hanslovskyp/git/paintera/target/generated-sources/annotations -g -nowarn -target 1.8 -source 1.8 -encoding UTF-8 [INFO] Compiling 317 source files to /home/hanslovskyp/git/paintera/target/classes [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4.687 s [INFO] Finished at: 2018-06-19T17:23:48-04:00 [INFO] Final Memory: 32M/109M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project paintera: Fatal error compiling: CompilerException: NullPointerException -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project paintera: Fatal error compiling at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: org.apache.maven.plugin.MojoExecutionException: Fatal error compiling at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:1086) at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: org.codehaus.plexus.compiler.CompilerException at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess (JavaxToolsCompiler.java:173) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile (JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: java.lang.NullPointerException at com.sun.tools.javac.main.JavaCompiler.readSourceFile (JavaCompiler.java:825) at com.sun.tools.javac.processing.JavacProcessingEnvironment$ImplicitCompleter.complete (JavacProcessingEnvironment.java:1510) at com.sun.tools.javac.code.Symbol.complete (Symbol.java:633) at com.sun.tools.javac.code.Symbol$ClassSymbol.complete (Symbol.java:1314) at com.sun.tools.javac.code.Type$ClassType.complete (Type.java:1139) at com.sun.tools.javac.code.Type$ClassType.getTypeArguments (Type.java:1065) at com.sun.tools.javac.code.Printer.visitClassType (Printer.java:237) at com.sun.tools.javac.code.Printer.visitClassType (Printer.java:52) at com.sun.tools.javac.code.Type$ClassType.accept (Type.java:992) at com.sun.tools.javac.code.Printer.visit (Printer.java:136) at com.sun.tools.javac.util.AbstractDiagnosticFormatter.formatArgument (AbstractDiagnosticFormatter.java:197) at com.sun.tools.javac.util.AbstractDiagnosticFormatter.formatArguments (AbstractDiagnosticFormatter.java:165) at com.sun.tools.javac.util.BasicDiagnosticFormatter.formatMessage (BasicDiagnosticFormatter.java:111) at com.sun.tools.javac.util.BasicDiagnosticFormatter.formatMessage (BasicDiagnosticFormatter.java:67) at com.sun.tools.javac.util.AbstractDiagnosticFormatter.formatArgument (AbstractDiagnosticFormatter.java:183) at com.sun.tools.javac.util.AbstractDiagnosticFormatter.formatArguments (AbstractDiagnosticFormatter.java:165) at com.sun.tools.javac.util.BasicDiagnosticFormatter.formatMessage (BasicDiagnosticFormatter.java:111) at com.sun.tools.javac.util.BasicDiagnosticFormatter.formatMessage (BasicDiagnosticFormatter.java:67) at com.sun.tools.javac.util.JCDiagnostic.getMessage (JCDiagnostic.java:771) at com.sun.tools.javac.api.ClientCodeWrapper$DiagnosticSourceUnwrapper.getMessage (ClientCodeWrapper.java:799) at org.codehaus.plexus.compiler.javac.JavaxToolsCompiler.compileInProcess (JavaxToolsCompiler.java:131) at org.codehaus.plexus.compiler.javac.JavacCompiler.performCompile (JavacCompiler.java:174) at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:1075) at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:168) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:955) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:290) at org.apache.maven.cli.MavenCli.main (MavenCli.java:194) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:564) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) [ERROR] [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException ```
hanslovsky commented 6 years ago

Needed to remove a lot of lines (too big for github comment otherwise):

`JAVA_HOME=/usr/lib/jvm/java-9-openjdk/ mvn -D maven.compiler.verbose=true clean package` ``` org.janelia.saalfeldlab.paintera.serialization.PainteraSource, org.janelia.saalfeldlab.paintera.control.assignment.action.AssignmentAction, org.janelia.saalfeldlab.paintera.control.assignment.UnableToPersist, bdv.fx.viewer.MultiBoxOverlayRendererFX, org.janelia.saalfeldlab.paintera.data.n5.ReflectionException} annotations: [java.lang.Override, java.lang.SuppressWarnings, com.google.gson.annotations.Expose, java.lang.SafeVarargs, picocli.CommandLine.Command, picocli.CommandLine.Option, picocli.CommandLine.Parameters, java.lang.FunctionalInterface] last round: false Processor org.scijava.annotations.AnnotationProcessor matches [java.lang.FunctionalInterface, java.lang.SafeVarargs, picocli.CommandLine.Option, java.lang.Override, java.lang.SuppressWarnings, picocli.CommandLine.Parameters, com.google.gson.annotations.Expose, picocli.CommandLine.Command] and returns false. [loading /modules/java.base/java/lang/invoke/MethodHandles.class] [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/HashMap.class] [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/Optional.class] [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Supplier.class] [loading /modules/java.base/java/util/stream/Collectors.class] [loading /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar(/org/slf4j/Logger.class)] [loading /home/hanslovskyp/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar(/org/slf4j/LoggerFactory.class)] [loading /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-core/5.0.0/bigdataviewer-core-5.0.0.jar(/bdv/viewer/Source.class)] [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/util/Arrays.class] [loading 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[loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-cache/1.0.0-beta-8/imglib2-cache-1.0.0-beta-8.jar(/net/imglib2/cache/UncheckedCache.class)] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/img/cell/CellGrid.class)] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/type/logic/BoolType.class)] [loading /modules/java.base/java/util/function/Predicate.class] [loading /modules/java.base/java/util/Map.class] [loading /home/hanslovskyp/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar(/gnu/trove/map/TLongIntMap.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar(/net/imglib2/type/label/VolatileLabelMultisetType.class)] [loading /modules/java.base/java/util/stream/LongStream.class] [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/reflect/Type.class] [loading 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/home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar(/org/janelia/saalfeldlab/n5/DataBlock.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar(/org/janelia/saalfeldlab/n5/GzipCompression.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar(/org/janelia/saalfeldlab/n5/LongArrayDataBlock.class)] [loading /home/hanslovskyp/.m2/repository/sc/fiji/bigdataviewer-vistools/1.0.0-beta-11/bigdataviewer-vistools-1.0.0-beta-11.jar(/bdv/util/volatiles/VolatileTypeMatcher.class)] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/img/NativeImg.class)] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2-realtransform/2.0.0/imglib2-realtransform-2.0.0.jar(/net/imglib2/realtransform/ScaleAndTranslation.class)] [loading 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/home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/IterableRealInterval.class)] [loading /modules/java.base/java/lang/Iterable.class] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/img/AbstractImg.class)] [loading /modules/java.base/java/lang/FunctionalInterface.class] [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/StringWriter.class] [loading /home/hanslovskyp/.m2/repository/net/sf/trove4j/trove4j/3.0.3/trove4j-3.0.3.jar(/gnu/trove/iterator/TIntIterator.class)] [loading /home/hanslovskyp/.m2/repository/net/imglib2/imglib2/5.1.0/imglib2-5.1.0.jar(/net/imglib2/exception/IncompatibleTypeException.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar(/net/imglib2/type/label/LabelMultisetEntry.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar(/net/imglib2/type/label/LabelMultisetEntryList.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5-label-multisets/0.2.0/n5-label-multisets-0.2.0.jar(/net/imglib2/type/label/LongMappedAccessData.class)] [loading /home/hanslovskyp/.m2/repository/com/google/guava/guava/21.0/guava-21.0.jar(/com/google/common/reflect/TypeToken.class)] [loading /modules/java.base/java/io/FileReader.class] [loading /home/hanslovskyp/.m2/repository/com/google/cloud/google-cloud-resourcemanager/0.38.0-alpha/google-cloud-resourcemanager-0.38.0-alpha.jar(/com/google/cloud/resourcemanager/Project.class)] [loading /home/hanslovskyp/.m2/repository/com/google/code/gson/gson/2.8.3/gson-2.8.3.jar(/com/google/gson/stream/JsonReader.class)] [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/jdk/internal/vm/annotation/Contended.class] [loading /modules/java.base/java/lang/SafeVarargs.class] [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /home/hanslovskyp/.m2/repository/info/picocli/picocli/3.0.0-beta-2/picocli-3.0.0-beta-2.jar(/picocli/CommandLine$Help.class)] [loading /home/hanslovskyp/.m2/repository/info/picocli/picocli/3.0.0-beta-2/picocli-3.0.0-beta-2.jar(/picocli/CommandLine$Help$Visibility.class)] [loading /home/hanslovskyp/.m2/repository/com/google/http-client/google-http-client/1.23.0/google-http-client-1.23.0.jar(/com/google/api/client/util/Key.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar(/org/janelia/saalfeldlab/n5/Compression.class)] [loading /home/hanslovskyp/.m2/repository/org/janelia/saalfeldlab/n5/2.0.2/n5-2.0.2.jar(/org/janelia/saalfeldlab/n5/Compression$CompressionType.class)] Round 2: input files: {} annotations: [] last round: true [total 2516ms] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4.814 s [INFO] Finished at: 2018-06-19T17:27:46-04:00 [INFO] Final Memory: 32M/109M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.7.0:compile (default-compile) on project paintera: Fatal error compiling: CompilerException: NullPointerException -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException ```
hanslovsky commented 6 years ago

cc @nthistle

hanslovsky commented 6 years ago

It seems like we will have to stay with Java 8 (in the near future), anyways: https://gitter.im/imglib/imglib2?at=5b2a2c82479ca266896b590c

hanslovsky commented 6 years ago

Not true anymore, with update of parent version, compiles with Java 10.

hanslovsky commented 4 years ago

Will probably be fixed by #400