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saalfeldlab / render

Render transformed image tiles
GNU General Public License v2.0
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TrakEM plugin prevents Fiji startup (MacOS) #105

Closed martinschorb closed 4 years ago

martinschorb commented 4 years ago

Hi,

I tried to have a look at the TrakEM plugin. (v.2.3.0, built yesterday with Maven on the same system)

Error while executing the main() method of class 'net.imagej.Main':
java.lang.SecurityException: Invalid signature file digest for Manifest main attributes
    at sun.security.util.SignatureFileVerifier.processImpl(SignatureFileVerifier.java:330)
    at sun.security.util.SignatureFileVerifier.process(SignatureFileVerifier.java:263)
    at java.util.jar.JarVerifier.processEntry(JarVerifier.java:318)
    at java.util.jar.JarVerifier.update(JarVerifier.java:230)
    at java.util.jar.JarFile.initializeVerifier(JarFile.java:383)
    at java.util.jar.JarFile.getInputStream(JarFile.java:450)
    at sun.net.www.protocol.jar.JarURLConnection.getInputStream(JarURLConnection.java:164)
    at java.net.URL.openStream(URL.java:1045)
    at org.scijava.annotations.Index$IndexItemIterator.getNextReader(Index.java:179)
    at org.scijava.annotations.Index$IndexItemIterator.readNext(Index.java:141)
    at org.scijava.annotations.Index$IndexItemIterator.next(Index.java:199)
    at org.scijava.annotations.Index$IndexItemIterator.next(Index.java:100)
    at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:84)
    at org.scijava.plugin.DefaultPluginFinder.findPlugins(DefaultPluginFinder.java:51)
    at org.scijava.plugin.PluginIndex.discover(PluginIndex.java:105)
    at org.scijava.Context.<init>(Context.java:271)
    at org.scijava.Context.<init>(Context.java:234)
    at org.scijava.Context.<init>(Context.java:174)
    at org.scijava.Context.<init>(Context.java:160)
    at net.imagej.ImageJ.<init>(ImageJ.java:77)
    at net.imagej.Main.main(Main.java:54)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:291)
    at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:198)
    at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:89)

When I remove the jar file again, it works.