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saalfeldlab / render

Render transformed image tiles
GNU General Public License v2.0
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Add pre-alignment method for multi-SEM #185

Closed minnerbe closed 7 months ago

minnerbe commented 7 months ago

After some experiments, it turns out that using a simple tileConfig.preAlign() greatly reduces the runtime of alignment for multi-SEM alignment. This is a quick hack to get this into production as fast as possible, but we should definitely clean up after the pipeline is complete.

For now, specify --preAlign MULTI_SEM to enable this.