saalfeldlab stitching-spark issues

saalfeldlab / stitching-spark

Reconstruct big images from overlapping tiled images on a Spark cluster.

GNU General Public License v2.0

34 stars 9 forks source link

issues

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Metadata file example

#46 chaichontat opened 10 months ago
0
allow user to override output directory

#45 krokicki closed 11 months ago
2
Open source license

#44 krokicki opened 1 year ago
0
Increase ImageJ memory for org.janelia.stitching.StitchingSpark

#43 carshadi closed 2 years ago
1
Flatfield Correction memory requirements

#42 carshadi opened 2 years ago
0
FlatfieldCorrection fails on GCP if solution images larger than 2GB

#41 carshadi opened 2 years ago
0
Run ConvertTIFFTilesToN5Spark on a Dataproc cluster

#40 carshadi opened 2 years ago
1
BloscCompression Class Not Found

#39 AdvancedImagingUTSW opened 2 years ago
4
Add command line option to apply raw tile stitching parameters to deconvolved tiles

#38 davidackerman closed 2 years ago
1
Already Have data in the form of N5

#37 n8-lightspeed closed 2 years ago
0
Posssibility of .dax file support

#36 pranathivemuri opened 2 years ago
3
Command line arguments to set the search path for flatfield correction files

#35 cgoina closed 2 years ago
0
Error converting tiffs to n5

#34 BioinfoTongLI opened 2 years ago
4
Write pixelResolution metadata into s0

#33 bogovicj opened 3 years ago
0
No such file or directory: 'mvn': 'mvn'

#32 RuihanZhang2015 opened 3 years ago
1
Update README.md

#31 StephanPreibisch closed 2 years ago
0
Fix memory issue in ImageList parser on AWS

#30 igorpisarev closed 4 years ago
0
Fix cloud backends

#29 igorpisarev closed 4 years ago
0
Export to slice TIFF doesn't support backends other than filesystem

#28 igorpisarev closed 4 years ago
1
Stitching and export steps fail on AWS

#27 igorpisarev closed 4 years ago
1
CZI to N5 conversion sometimes fails

#26 igorpisarev closed 4 years ago
0
Initial tile coordinates are calculated incorrectly when Z axis is swapped with X/Y

#25 igorpisarev closed 4 years ago
0
Parser fails if overlap between adjacent tiles is more than 50%

#24 igorpisarev closed 4 years ago
0
Improve stitching robustness

#23 igorpisarev closed 4 years ago
0
Fill value in exports

#22 igorpisarev closed 4 years ago
0
Read metadata from CZI files instead of .mvl file

#21 igorpisarev opened 4 years ago
0
Fix OutOfMemory error in CZI converter for large inputs

#20 igorpisarev closed 4 years ago
0
Unclear how to build JSON files

#19 justjess678 opened 4 years ago
1
Matlab deconvolution

#18 igorpisarev closed 5 years ago
0
Rescale PSF with respect to Z step

#17 igorpisarev closed 5 years ago
1
Blockwise deconvolution

#16 igorpisarev closed 5 years ago
0
Add option to specify background intensity value on per-channel basis

#15 igorpisarev closed 5 years ago
0
CZI parser improvements

#14 igorpisarev closed 5 years ago
0
Add blind deconvolution

#13 igorpisarev opened 5 years ago
0
Add functionality to preview data before stitching

#12 igorpisarev opened 5 years ago
0
CellContainer too big.

#11 AdvancedImagingUTSW closed 5 years ago
3
Add option to use only one channel for stitching

#10 igorpisarev closed 5 years ago
0
Can we add breakpoint/restart feature? ----- Feature request

#9 vigo332 opened 5 years ago
1
Use channel transformation from N5 Viewer metadata for TIFF slice export

#8 igorpisarev opened 5 years ago
0
Add option to use only one channel for stitching

#7 igorpisarev closed 5 years ago
0
Deconvolution on Spark

#6 igorpisarev closed 5 years ago
0
[Flatfield] Histogram settings in attributes.json are ignored on restart

#5 igorpisarev opened 5 years ago
0
Add a License

#4 bogovicj closed 6 years ago
1
Cloud platform support

#3 igorpisarev closed 6 years ago
0
Document parameters

#2 axtimwalde closed 6 years ago
2
Improve documentation

#1 axtimwalde closed 6 years ago
1