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saalfeldlab
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stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.
GNU General Public License v2.0
34
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9
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Metadata file example
#46
chaichontat
opened
10 months ago
0
allow user to override output directory
#45
krokicki
closed
11 months ago
2
Open source license
#44
krokicki
opened
1 year ago
0
Increase ImageJ memory for org.janelia.stitching.StitchingSpark
#43
carshadi
closed
2 years ago
1
Flatfield Correction memory requirements
#42
carshadi
opened
2 years ago
0
FlatfieldCorrection fails on GCP if solution images larger than 2GB
#41
carshadi
opened
2 years ago
0
Run ConvertTIFFTilesToN5Spark on a Dataproc cluster
#40
carshadi
opened
2 years ago
1
BloscCompression Class Not Found
#39
AdvancedImagingUTSW
opened
2 years ago
4
Add command line option to apply raw tile stitching parameters to deconvolved tiles
#38
davidackerman
closed
2 years ago
1
Already Have data in the form of N5
#37
n8-lightspeed
closed
2 years ago
0
Posssibility of .dax file support
#36
pranathivemuri
opened
2 years ago
3
Command line arguments to set the search path for flatfield correction files
#35
cgoina
closed
2 years ago
0
Error converting tiffs to n5
#34
BioinfoTongLI
opened
2 years ago
4
Write pixelResolution metadata into s0
#33
bogovicj
opened
3 years ago
0
No such file or directory: 'mvn': 'mvn'
#32
RuihanZhang2015
opened
3 years ago
1
Update README.md
#31
StephanPreibisch
closed
2 years ago
0
Fix memory issue in ImageList parser on AWS
#30
igorpisarev
closed
4 years ago
0
Fix cloud backends
#29
igorpisarev
closed
4 years ago
0
Export to slice TIFF doesn't support backends other than filesystem
#28
igorpisarev
closed
4 years ago
1
Stitching and export steps fail on AWS
#27
igorpisarev
closed
4 years ago
1
CZI to N5 conversion sometimes fails
#26
igorpisarev
closed
4 years ago
0
Initial tile coordinates are calculated incorrectly when Z axis is swapped with X/Y
#25
igorpisarev
closed
4 years ago
0
Parser fails if overlap between adjacent tiles is more than 50%
#24
igorpisarev
closed
4 years ago
0
Improve stitching robustness
#23
igorpisarev
closed
4 years ago
0
Fill value in exports
#22
igorpisarev
closed
4 years ago
0
Read metadata from CZI files instead of .mvl file
#21
igorpisarev
opened
4 years ago
0
Fix OutOfMemory error in CZI converter for large inputs
#20
igorpisarev
closed
4 years ago
0
Unclear how to build JSON files
#19
justjess678
opened
4 years ago
1
Matlab deconvolution
#18
igorpisarev
closed
5 years ago
0
Rescale PSF with respect to Z step
#17
igorpisarev
closed
5 years ago
1
Blockwise deconvolution
#16
igorpisarev
closed
5 years ago
0
Add option to specify background intensity value on per-channel basis
#15
igorpisarev
closed
5 years ago
0
CZI parser improvements
#14
igorpisarev
closed
5 years ago
0
Add blind deconvolution
#13
igorpisarev
opened
5 years ago
0
Add functionality to preview data before stitching
#12
igorpisarev
opened
5 years ago
0
CellContainer too big.
#11
AdvancedImagingUTSW
closed
5 years ago
3
Add option to use only one channel for stitching
#10
igorpisarev
closed
5 years ago
0
Can we add breakpoint/restart feature? ----- Feature request
#9
vigo332
opened
5 years ago
1
Use channel transformation from N5 Viewer metadata for TIFF slice export
#8
igorpisarev
opened
5 years ago
0
Add option to use only one channel for stitching
#7
igorpisarev
closed
5 years ago
0
Deconvolution on Spark
#6
igorpisarev
closed
5 years ago
0
[Flatfield] Histogram settings in attributes.json are ignored on restart
#5
igorpisarev
opened
5 years ago
0
Add a License
#4
bogovicj
closed
6 years ago
1
Cloud platform support
#3
igorpisarev
closed
6 years ago
0
Document parameters
#2
axtimwalde
closed
6 years ago
2
Improve documentation
#1
axtimwalde
closed
6 years ago
1