sabrinadeltoro pygr issues

sabrinadeltoro / pygr

Automatically exported from code.google.com/p/pygr

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You documentation points to a porn site

#138 GoogleCodeExporter closed 9 years ago
1
building the docs fails with missing modules (seqfmt, cnestedlist, MySQLdb)

#137 GoogleCodeExporter opened 9 years ago
0
Is the UCLA metabase database down?

#136 GoogleCodeExporter opened 9 years ago
0
Can't build in Lion, because gcc-4.0 is gone after xcode 4 killed xcode 3

#135 GoogleCodeExporter opened 9 years ago
3
UCSCEnsemblInterface fails with Genome doesn't exist error

#134 GoogleCodeExporter opened 9 years ago
3
libnclist: find_suboverlap_start doesn't check isub against nlists, can segfault

#133 GoogleCodeExporter opened 9 years ago
1
seqdb / blast tests should clean up index files

#132 GoogleCodeExporter opened 9 years ago
0
SQLTable.new doesn't add new rows.

#131 GoogleCodeExporter opened 9 years ago
1
attrAlias not passed on when using sqlgraph.SQLGraph

#130 GoogleCodeExporter opened 9 years ago
1
Link broken on pygr's google code site

#129 GoogleCodeExporter closed 9 years ago
1
Check Pyrex 0.9.9 support

#128 GoogleCodeExporter opened 9 years ago
2
no default annotationType for AnnotationDBs served by XMLRPC

#127 GoogleCodeExporter opened 9 years ago
0
pygr requires 10.4 SDK on Mac OS X 10.6

#126 GoogleCodeExporter closed 9 years ago
4
Problem with MetaBase server at UCLA .

#125 GoogleCodeExporter closed 9 years ago
2
missing file (pygr/seqfmt.c: No such file or directory) from latest clone?

#124 GoogleCodeExporter closed 9 years ago
2
Add memory reporting for megatests

#123 GoogleCodeExporter opened 9 years ago
0
Add megatest for short-read mapping

#122 GoogleCodeExporter opened 9 years ago
0
formatdb fail tests litters file system with empty files

#121 GoogleCodeExporter opened 9 years ago
0
XMLRPC resource for Caenorhabditis brenneri

#120 GoogleCodeExporter opened 9 years ago
0
ShelveMetabase doesn't work with external bsddb3

#119 GoogleCodeExporter opened 9 years ago
3
blockIterators mechanism does NOT require allocating new cursor

#118 GoogleCodeExporter opened 9 years ago
0
run pep8.py on pygr source code

#117 GoogleCodeExporter closed 9 years ago
4
schema binding gives an integer key error

#116 GoogleCodeExporter closed 9 years ago
1
Support NLMSA requerying with subintervals of original query sequence.

#115 GoogleCodeExporter opened 9 years ago
2
by default, unit tests should be gathered and run all together

#114 GoogleCodeExporter opened 9 years ago
0
pass **kwargs for do_gunzip and run_gunzip (downloader.py)

#113 GoogleCodeExporter opened 9 years ago
1
Add download=True XML-RPC support for AnnotationDB

#112 GoogleCodeExporter opened 9 years ago
0
Refactor NLMSA methods to provide convenience functions with explicit names

#111 GoogleCodeExporter opened 9 years ago
0
Remove python2.3 support for pygr 0.9

#110 GoogleCodeExporter opened 9 years ago
0
Graph(edgeDB=None) should switch to trivial edge packing mode

#109 GoogleCodeExporter closed 9 years ago
1
Provide proper inverse classes for Mapping, Graph

#108 GoogleCodeExporter opened 9 years ago
0
deprecate multiValue mode for mapping.Mapping

#107 GoogleCodeExporter opened 9 years ago
0
Add blast parameters to BlastMapping constructor

#106 GoogleCodeExporter opened 9 years ago
0
Provide convenience methods for adding new resources to running XML-RPC servers

#105 GoogleCodeExporter opened 9 years ago
0
Occasional garbage in megatest output with Python-2.4

#104 GoogleCodeExporter opened 9 years ago
3
Excessive memory consumption in megatests

#103 GoogleCodeExporter closed 9 years ago
9
Possible memory leak in NLMSA code

#102 GoogleCodeExporter closed 9 years ago
5
python2.3/setuptools bug: pyrexc not run

#101 GoogleCodeExporter opened 9 years ago
2
Keep code-example Wiki pages in Git repository, synchronise them automatically

#100 GoogleCodeExporter opened 9 years ago
1
SQLTable.itervalues() can be interrupted by other queries

#99 GoogleCodeExporter closed 9 years ago
5
Install tests with pygr

#98 GoogleCodeExporter opened 9 years ago
0
IOError: Iterator has no database

#97 GoogleCodeExporter closed 9 years ago
7
Put license & copyright information in LICENSE.txt and/or at the top of README

#96 GoogleCodeExporter closed 9 years ago
2
Rename README to README.txt

#95 GoogleCodeExporter closed 9 years ago
2
add test for fixed blast parsing issue (negative orientation)

#94 GoogleCodeExporter closed 9 years ago
1
add test for fixed blast parsing issue (multirecord)

#93 GoogleCodeExporter closed 9 years ago
1
Links to Web pages to replace verbose error messages

#92 GoogleCodeExporter opened 9 years ago
1
0.7-0.8 compatibility (incl. testing)

#91 GoogleCodeExporter opened 9 years ago
1
support for http proxy?

#90 GoogleCodeExporter opened 9 years ago
2
Need for solexa seqdb with integer (64bit) ID which requires no hashing/indexing

#89 GoogleCodeExporter opened 9 years ago
4