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saccharis / SACCHARIS_2

CLI and GUI based bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences.
GNU General Public License v3.0
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Error parsing sequence files #7

Open lowkri opened 3 weeks ago

lowkri commented 3 weeks ago

Currently, user sequence fasta files are not being imported correctly. We are actively working on a fix.

Error: (saccharis) abbottlab@proteus:/media/abbottlab/QNAP-Proteus/kristin/test$ saccharis -c characterized -f GH33 --fresh -s sialidases.fasta Traceback (most recent call last): File "/home/abbottlab/anaconda3/envs/saccharis/bin/saccharis", line 10, in sys.exit(cli_main()) ^^^^^^^^^^ File "/home/abbottlab/anaconda3/envs/saccharis/lib/python3.11/site-packages/saccharis/CLI.py", line 232, in cli_main raise Exception("Error parsing user sequence file(s) from command line. This shouldn't happen, " Exception: Error parsing user sequence file(s) from command line. This shouldn't happen, please report as a bug through github.

lowkri commented 3 weeks ago

While we are waiting for a solution to the most recent version, please install an older version that should work in the meantime. conda install saccharis=2.0.0.dev21