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sacdallago / bio_embeddings

Get protein embeddings from protein sequences
http://docs.bioembeddings.com
MIT License
460 stars 65 forks source link

ImportError when importing ProtTransT5XLU50Embedder #200

Open AugustEhl opened 2 years ago

AugustEhl commented 2 years ago

Hi, I get the following error when trying to import ProtTransT5XLU50Embedder:

ImportError: cannot import name 'ProtTransT5XLU50Embedder from 'bio_embeddings.embed (/home/usr/EAT/venv/lib/python3.8/site-packages/bio_embeddings/embed/__init__.py)'

I installed bio_embeddings with:

pip install bio-embeddings

Anyone got the same error? Did you solve it?

SebieF commented 1 year ago

Hello,

this is kind of a late answer but likely you have to install via

pip install bio-embeddings[all]

or

pip install bio-embeddings[prottrans]