OSError: Unable to open file (truncated file: eof = 63504384, sblock->base_addr = 0, stored_eof = 374434776)

[gerdos]

I was constantly getting the following error:

  File "parse_data.py", line 10, in <module>
    embedder = SeqVecEmbedder()
  File "/home/gerdos/.local/lib/python3.8/site-packages/bio_embeddings/embed/seqvec_embedder.py", line 66, in __init__
    self._model = ElmoEmbedder(
  File "/home/gerdos/.local/lib/python3.8/site-packages/allennlp/commands/elmo.py", line 175, in __init__
    self.elmo_bilm = _ElmoBiLm(options_file, weight_file)
  File "/home/gerdos/.local/lib/python3.8/site-packages/allennlp/modules/elmo.py", line 527, in __init__
    self._token_embedder = _ElmoCharacterEncoder(options_file, weight_file, requires_grad=requires_grad)
  File "/home/gerdos/.local/lib/python3.8/site-packages/allennlp/modules/elmo.py", line 312, in __init__
    self._load_weights()
  File "/home/gerdos/.local/lib/python3.8/site-packages/allennlp/modules/elmo.py", line 400, in _load_weights
    self._load_char_embedding()
  File "/home/gerdos/.local/lib/python3.8/site-packages/allennlp/modules/elmo.py", line 407, in _load_char_embedding
    with h5py.File(cached_path(self._weight_file), 'r') as fin:
  File "/home/gerdos/.local/lib/python3.8/site-packages/h5py/_hl/files.py", line 567, in __init__
    fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
  File "/home/gerdos/.local/lib/python3.8/site-packages/h5py/_hl/files.py", line 231, in make_fid
    fid = h5f.open(name, flags, fapl=fapl)
  File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "h5py/h5f.pyx", line 106, in h5py.h5f.open
OSError: Unable to open file (truncated file: eof = 63504384, sblock->base_addr = 0, stored_eof = 374434776)

After a while I was able to solve it by removing the cached weight file from

/home/gerdos/.cache/bio_embeddings/seqvec/weights_file

This solve the error, so if you are having the same issue do:

rm $HOME/.cache/bio_embeddings/seqvec/weights_file

[Zaozzz]

Thanks!!!!