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sacdallago / bio_embeddings

Get protein embeddings from protein sequences
http://docs.bioembeddings.com
MIT License
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Can not install bio-embedding in wsl #230

Open faruk17035 opened 1 year ago

faruk17035 commented 1 year ago

pyx_f_5thinc_6linear_7avgtron_18AveragedPerceptron_update_weight_ftrl(pyx_obj_5thinc_6linear_7avgtron_AveragedPerceptron, pyx_t_5thinc_8typedefs_feat_t, __pyx_t_5thinc_8typedefs_class_t, pyx_t_5thinc_8typedefs_weight_t, int)’: thinc/linear/avgtron.cpp:7391:48: warning: taking address of packed member of ‘pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | pyx_f_5thinc_6linear_7avgtron_adam_update((&(pyx_v_feat->curr[pyx_v_i]).val), (&(pyx_v_feat->mom1[pyx_v_i]).val), (&(pyx_v_feat->mom2[pyx_v_i]).val), pyx_v_self->time, (pyx_v_feat->times[pyx_v_i]).val, pyx_v_grad, pyx_v_self->learn_rate, pyx_v_self->momentum); | ~^~~~~~~~~ thinc/linear/avgtron.cpp:7391:88: warning: taking address of packed member of ‘pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | pyx_f_5thinc_6linear_7avgtron_adam_update((&(pyx_v_feat->curr[pyx_v_i]).val), (&(pyx_v_feat->mom1[pyx_v_i]).val), (&(pyx_v_feat->mom2[pyx_v_i]).val), pyx_v_self->time, (pyx_v_feat->times[pyx_v_i]).val, pyx_v_grad, pyx_v_self->learn_rate, pyx_v_self->momentum); | ~^~~~~~~~~ thinc/linear/avgtron.cpp:7391:128: warning: taking address of packed member of ‘pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | pyx_f_5thinc_6linear_7avgtron_adam_update((&(pyx_v_feat->curr[pyx_v_i]).val), (&(pyx_v_feat->mom1[pyx_v_i]).val), (&(pyx_v_feat->mom2[pyx_v_i]).val), pyx_v_self->time, (pyx_v_feat->times[pyx_v_i]).val, pyx_v_grad, __pyx_v_self->learn_rate, pyx_v_self->momentum); | ~^~~~~~~~~ In file included from /usr/include/python3.10/Python.h:74, from thinc/linear/avgtron.cpp:4: thinc/linear/avgtron.cpp: In function ‘void pyx_tp_dealloc_5thinc_6linear_7avgtron_AveragedPerceptron(PyObject)’: /usr/include/python3.10/object.h:133:33: error: lvalue required as increment operand 133 | #define Py_REFCNT(ob) _Py_REFCNT(_PyObject_CAST_CONST(ob)) | ~~^~~~~~ thinc/linear/avgtron.cpp:14031:7: note: in expansion of macro ‘Py_REFCNT’ 14031 | ++Py_REFCNT(o); | ^~~ /usr/include/python3.10/object.h:133:33: error: lvalue required as decrement operand 133 | #define Py_REFCNT(ob) _Py_REFCNT(_PyObject_CAST_CONST(ob)) | ~~^~~~~~ thinc/linear/avgtron.cpp:14033:7: note: in expansion of macro ‘Py_REFCNT’ 14033 | --Py_REFCNT(o); | ^~~ In file included from /usr/include/python3.10/unicodeobject.h:1046, from /usr/include/python3.10/Python.h:83, from thinc/linear/avgtron.cpp:4: thinc/linear/avgtron.cpp: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject, PyObject, PyObject, Py_ssize_t, const char)’: /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~^~~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~^~~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~^~~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~^~~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~^~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~ error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for thinc Running setup.py clean for thinc Building wheel for blis (setup.py): started Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): finished with status 'error' error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [1813 lines of output] BLIS_COMPILER? None /usr/lib/python3/dist-packages/pkg_resources/init.py:116: PkgResourcesDeprecationWarning: 1.1build1 is an invalid version and will not be supported in a future release warnings.warn( /usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.10 creating build/lib.linux-x86_64-3.10/blis copying blis/about.py -> build/lib.linux-x86_64-3.10/blis copying blis/benchmark.py -> build/lib.linux-x86_64-3.10/blis copying blis/init.py -> build/lib.linux-x86_64-3.10/blis creating build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/common.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/test_dotv.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/test_gemm.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/init.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/cy.pyx -> build/lib.linux-x86_64-3.10/blis copying blis/py.pyx -> build/lib.linux-x86_64-3.10/blis copying blis/cy.pxd -> build/lib.linux-x86_64-3.10/blis copying blis/init.pxd -> build/lib.linux-x86_64-3.10/blis running build_ext unix py_compiler gcc {'LS_COLORS': 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'HOSTTYPE': 'x86_64', 'LESSCLOSE': '/usr/bin/lesspipe %s %s', 'LANG': 'C.UTF-8', 'OLDPWD': '/home/matt/repos/flame-blis', 'VIRTUAL_ENV': '/home/matt/repos/wheelwright/env3.6', 'USER': 'matt', 'PWD': '/home/matt/repos/cython-blis', 'HOME': '/home/matt', 'NAME': 'LAPTOP-OMKOB3VM', 'XDG_DATA_DIRS': '/usr/local/share:/usr/share:/var/lib/snapd/desktop', 'SHELL': '/bin/bash', 'TERM': 'xterm-256color', 'SHLVL': '1', 'LOGNAME': 'matt', 'PATH': '/home/matt/repos/wheelwright/env3.6/bin:/tmp/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5/ConEmu/Scripts:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5/ConEmu:/mnt/c/Python37/Scripts:/mnt/c/Python37:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/iCLS:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/iCLS:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files/Intel/WiFi/bin:/mnt/c/Program Files/Common Files/Intel/WirelessCommon:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/ProgramData/chocolatey/bin:/mnt/c/Program Files/Git/cmd:/mnt/c/Program Files/LLVM/bin:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Windows/System32/OpenSSH:/mnt/c/Program Files/nodejs:/mnt/c/Users/matt/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/matt/AppData/Local/Programs/Microsoft VS Code/bin:/mnt/c/Users/matt/AppData/Roaming/npm:/snap/bin:/mnt/c/Program Files/Oracle/VirtualBox', 'PS1': '(env3.6) \[\e]0;\u@\h: \w\a\]${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ ', 'VAGRANT_HOME': '/home/matt/.vagrant.d/', 'OMP_NUMTHREADS': '1', 'LESSOPEN': '| /usr/bin/lesspipe %s', '': '/home/matt/repos/wheelwright/env3.6/bin/python'} gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/generic/bli_cntx_init_generic.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_generic.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/haswell/bli_cntx_init_haswell.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_haswell.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/penryn/bli_cntx_init_penryn.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_penryn.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/piledriver/bli_cntx_init_piledriver.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_piledriver.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/sandybridge/bli_cntx_init_sandybridge.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_sandybridge.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/steamroller/bli_cntx_init_steamroller.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_steamroller.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_amaxv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_amaxv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_axpyv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_axpyv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_axpyv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_axpyv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_dotv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_dotv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotxv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_dotxv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_scalv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_scalv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_scalv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_scalv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1f/bli_axpyf_zen_int_8.c -o /tmp/tmp5sr9t6kf/bli_axpyf_zen_int_8.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1f/bli_dotxf_zen_int_8.c -o /tmp/tmp5sr9t6kf/bli_dotxf_zenint

ddofer commented 1 year ago

I am encountering the same issue, installing on WSL via pip install. Conda environment.

(Huge list of errors, involving GCC?) - then:

` error: command '/usr/bin/gcc' failed with exit code 1 [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for blis
    Running setup.py clean for blis
  Failed to build preshed thinc blis
  ERROR: Could not build wheels for preshed, thinc, blis, which is required to install pyproject.toml-based projects      [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error`

FabioPfae commented 9 months ago

What worked for me, is using an older python version 3.8 in a conda environment. It is important to use "conda deactivate" to deactivate the "base" environment before you create a new environment, this solved the following error for me:

/usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.