Can not install bioembedings on ubuntu? Please help

[faruk17035]

  1644 | static void bli_obj_init_subpart_from( obj_t* a, obj_t* b )                                                                                                           |             ^~~~~~~~~~~~~~~~~~~~~~~~~                                                                                                                           error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1                                                                                                  [end of output]                                                                                                                                                                                                                                                                                                                             note: This error originates from a subprocess, and is likely not a problem with pip.                                                                                    ERROR: Failed building wheel for blis                                                                                                                                   Running setup.py clean for blis                                                                                                                                       Failed to build preshed thinc blis                                                                                                                                      Installing collected packages: wasabi, plac, cymem, wheel, tqdm, srsly, setuptools, preshed, numpy, murmurhash, Cython, blis, thinc                                       Running setup.py install for preshed: started                                                                                                                           Running setup.py install for preshed: finished with status 'error'                                                                                                      error: subprocess-exited-with-error                                                                                                                                                                                                                                                                                                             × Running setup.py install for preshed did not run successfully.                                                                                                        │ exit code: 1                                                                                                                                                          ╰─> [16 lines of output]                                                                                                                                                    /usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.                                                                                                                                                             warnings.warn(                                                                                                                                                        /usr/lib/python3/dist-packages/pkg_resources/__init__.py:116: PkgResourcesDeprecationWarning: 1.1build1 is an invalid version and will not be supported in a future release                                                                                                                                                                       warnings.warn(                                                                                                                                                        running install                                                                                                                                                         /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.                                                                                                                                                                 warnings.warn(                                                                                                                                                        running build                                                                                                                                                           running build_py                                                                                                                                                        running build_ext                                                                                                                                                       building 'preshed.maps' extension                                                                                                                                       x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -I/usr/include/python3.10 -c preshed/maps.cpp -o build/temp.linux-x86_64-3.10/preshed/maps.o -O3 -Wno-strict-prototypes -Wno-unused-function                                                                              cc1plus: warning: command-line option ‘-Wno-strict-prototypes’ is valid for C/ObjC but not for C++                                                                      cc1plus: fatal error: preshed/maps.cpp: No such file or directory                                                                                                       compilation terminated.                                                                                                                                                 error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1                                                                                                  [end of output]                                                                                                                                                                                                                                                                                                                             note: This error originates from a subprocess, and is likely not a problem with pip.                                                                                  error: legacy-install-failure                                                                                                                                                                                                                                                                                                                   × Encountered error while trying to install package.                                                                                                                    ╰─> preshed                                                                                                                                                                                                                                                                                                                                     note: This is an issue with the package mentioned above, not pip.                                                                                                       hint: See above for output from the failure.                                                                                                                            [end of output]                                                                                                                                                                                                                                                                                                                             note: This error originates from a subprocess, and is likely not a problem with pip.                                                                                  error: subprocess-exited-with-error                                                                                                                                                                                                                                                                                                             × pip subprocess to install build dependencies did not run successfully.                                                                                                │ exit code: 1                                                                                                                                                          ╰─> See above for output.                                                                                                                                                                                                                                                                                                                       note: This error originates from a subprocess, and is likely not a problem with pip.

[FabioPfae]

What worked for me, is using an older python version 3.8 in a conda environment. It is important to use "conda deactivate" to deactivate the "base" environment before you create a new environment, this solved the following error for me:

/usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.