sacdallago / bio_embeddings

Get protein embeddings from protein sequences
http://docs.bioembeddings.com
MIT License
460 stars 65 forks source link

AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__' #235

Open VarianZhou opened 1 year ago

VarianZhou commented 1 year ago

When I was installing your module, it always raises this error. The details are given below: ''' Collecting gensim<4.0.0,>=3.8.2 (from bio-embeddings[seqvec]) Using cached gensim-3.8.3.tar.gz (23.4 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... error error: subprocess-exited-with-error

× Preparing metadata (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [55 lines of output] running dist_info creating C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info writing C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info\PKG-INFO writing dependency_links to C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info\dependency_links.txt writing requirements to C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info\requires.txt writing top-level names to C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info\top_level.txt writing manifest file 'C:\Users\varia\AppData\Local\Temp\pip-modern-metadata-wvma51pv\gensim.egg-info\SOURCES.txt' Traceback (most recent call last): File "C:\Users\varia\AppData\Local\Programs\Python\Python39-32\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\varia\AppData\Local\Programs\Python\Python39-32\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(hook_input['kwargs']) File "C:\Users\varia\AppData\Local\Programs\Python\Python39-32\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 149, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 367, in File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools__init__.py", line 107, in setup return distutils.core.setup(attrs) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup return run_commands(dist) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands dist.run_commands() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands self.run_command(cmd) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\dist.py", line 1234, in run_command super().run_command(command) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 99, in run self.egg_info.run() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 314, in run self.find_sources() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 322, in find_sources mm.run() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 551, in run self.add_defaults() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\egg_info.py", line 589, in add_defaults sdist.add_defaults(self) File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools\command\sdist.py", line 104, in add_defaults super().add_defaults() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 251, in add_defaults self._add_defaults_ext() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\command\sdist.py", line 335, in _add_defaults_ext build_ext = self.get_finalized_command('build_ext') File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 305, in get_finalized_command cmd_obj.ensure_finalized() File "C:\Users\varia\AppData\Local\Temp\pip-build-env-k1zza_mq\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 111, in ensure_finalized self.finalize_options() File "", line 111, in finalize_options AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__' [end of output] '''