Closed mheinzinger closed 1 year ago
Here an example how to access structures from AFDB that Dagmar wrote for her project: Download_AF2_files.txt
We solved it slightly differently.
Based on the standard URL, LambdaPP checks if the structure is available. If not (error 404/500) fall back to structure prediction.
As we already retrieve the sequence for a given UniProt-ID via UniProt's API, we could expand the same logic towards retrieving the AF2 structure (IF existing). This would save compute on unnecessarily re-computing sth that is already there. Logic could be sth as follows:
IF query is in UniProt: