Closed EAC-T closed 3 years ago
Hi @EAC-T ,
Our package Spectre uses CytoNorm as the primary batch alignment method. In an upcoming update, we'll have an update where you can perform alignment with whatever clustering approach you want (K-means, phenograph, etc). It's not exactly the same implementation as CytoNorm, but it's similar. Would this work for you?
Tom
Hi @tomashhurst
Yes that would be great!
Thank you
Hi @EAC-T ,
I'm afraid that would have been out of scope for our implementation, so I'm very happy to hear @tomashhurst will be able to provide this in the Spectre package!
All the best, Sofie
Hi everyone, For some reason FlowSOM can't cluster my T cells into naive and memory, K-mean can, is there a way to use K-mean clustering instead? Thank you a lot