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saeyslab / FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data
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Apply FlowSOM to csv #10

Closed fbenedett closed 2 years ago

fbenedett commented 2 years ago

Hello, indeed this is not a real "issue". I got data from an instrument called "Hyperion" (company FLUIDIGM). The general idea is that they produce data similar to flow cytometry for images of tissue. The data I get is in CSV format. Is there a way to apply FlowSOM on a matrix or data frame obtained from a csv file?

Thanks.

fbenedett commented 2 years ago

Sorry, I found the way: fs <- FlowSOM::ReadInput(as.matrix(data.frame(data)))