Clustering with FlowSOM is possible and cell clustering with napari-cluster-plotter (https://github.com/saeyslab/harpy/blob/main/experiments/example_of_cluster_plotter.ipynb) is possible. It would be interesting to view the FlowSOM tree in a similar widget and allow labeling of the metaclusters on the tree (similar to Pixie pipeline notebook GUI, but with the imaging data in napari instead of Mantis).
[ ] create Widget class
[ ] button to cluster
[ ] button to plot FlowSOM tree
[ ] button to get labels in table
[ ] select with lasso tool
[ ] view selection on images
[ ] allow renaming metacluster labels to cell type names
[ ] plot cluster heatmap similar to to Pixie pipeline
Clustering with FlowSOM is possible and cell clustering with napari-cluster-plotter (https://github.com/saeyslab/harpy/blob/main/experiments/example_of_cluster_plotter.ipynb) is possible. It would be interesting to view the FlowSOM tree in a similar widget and allow labeling of the metaclusters on the tree (similar to Pixie pipeline notebook GUI, but with the imaging data in napari instead of Mantis).